# HG changeset patch
# User mingchen0919
# Date 1502213614 14400
# Node ID 90207652b06a3e2030e7186c228b18b45cb038d2
# Parent  75e53be98c511348f921b462bbf88995a354f185
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_mirdeep2 commit 29e8b40899c71ca12fd07b2bb530b0ee65037588-dirty

diff -r 75e53be98c51 -r 90207652b06a mirdeep2.xml
--- a/mirdeep2.xml	Tue Aug 08 13:23:44 2017 -0400
+++ b/mirdeep2.xml	Tue Aug 08 13:33:34 2017 -0400
@@ -158,12 +158,12 @@
             }
         </citation>
         <citation type="bibtex">
-            @book{xie2015dynamic,
-            title={Dynamic Documents with R and knitr},
-            author={Xie, Yihui},
-            volume={29},
-            year={2015},
-            publisher={CRC Press}
+            @article{allaire2016rmarkdown,
+            title={rmarkdown: Dynamic Documents for R, 2016},
+            author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
+            journal={R package version 0.9},
+            volume={6},
+            year={2016}
             }
         </citation>
         <citation type="bibtex">
diff -r 75e53be98c51 -r 90207652b06a mirdeep2_mapper.xml
--- a/mirdeep2_mapper.xml	Tue Aug 08 13:23:44 2017 -0400
+++ b/mirdeep2_mapper.xml	Tue Aug 08 13:33:34 2017 -0400
@@ -112,12 +112,12 @@
             }
         </citation>
         <citation type="bibtex">
-            @book{xie2015dynamic,
-            title={Dynamic Documents with R and knitr},
-            author={Xie, Yihui},
-            volume={29},
-            year={2015},
-            publisher={CRC Press}
+            @article{allaire2016rmarkdown,
+            title={rmarkdown: Dynamic Documents for R, 2016},
+            author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
+            journal={R package version 0.9},
+            volume={6},
+            year={2016}
             }
         </citation>
         <citation type="bibtex">