# HG changeset patch
# User mingchen0919
# Date 1514600541 18000
# Node ID 1723d63c7d951718b5356f3567ef92123b6b067f
# Parent  8354d118baabbf86e5e24bbdad46884e140ef48f
update

diff -r 8354d118baab -r 1723d63c7d95 rmarkdown_samtools_flagstat.xml
--- a/rmarkdown_samtools_flagstat.xml	Wed Dec 27 23:29:32 2017 -0500
+++ b/rmarkdown_samtools_flagstat.xml	Fri Dec 29 21:22:21 2017 -0500
@@ -13,8 +13,8 @@
   </stdio>
   <command><![CDATA[                    Rscript '${__tool_directory__}/rmarkdown_samtools_flagstat_render.R'
                         -e $echo
-                        -b $input_bam
-                        -n $input_bam.name
+                        -b '$input_bam'
+                        -n '$input_bam.name'
                         -r $report
                         -d $report.files_path
                         -s $sink_message