Mercurial > repos > mingchen0919 > wgcna
changeset 4:5717a09ed722 draft
Uploaded
| author | mingchen0919 |
|---|---|
| date | Tue, 28 Feb 2017 10:46:47 -0500 |
| parents | 55b76aecccec |
| children | 23a539f4148c |
| files | soft-threshold.R |
| diffstat | 1 files changed, 14 insertions(+), 1 deletions(-) [+] |
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--- a/soft-threshold.R Mon Feb 27 23:00:03 2017 -0500 +++ b/soft-threshold.R Tue Feb 28 10:46:47 2017 -0500 @@ -1,5 +1,18 @@ #!/usr/binenv Rscript +## Create the personal library if it doesn't exist. Ignore a warning if the directory already exists. +dir.create(Sys.getenv("R_LIBS_USER"), showWarnings = FALSE, recursive = TRUE) +## Install one package. +install.packages("getopt", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu", dependencies = TRUE ) +install.packages("ggplot2", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) +install.packages("ggdendro", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) +install.packages("class", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) +install.packages("cluster", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) +install.packages("impute", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) +install.packages("Hmisc", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) +install.packages("WGCNA", Sys.getenv("R_LIBS_USER"), repos = "http://cran.case.edu" , dependencies = TRUE) + + # A command-line interface to WGCNA for use with galaxy @@ -95,4 +108,4 @@ xlab("R power") + ylab("Mean connectivity") -dev.off() \ No newline at end of file +dev.off()