diff libexec/filterSomaticVariants.pl @ 9:0e8e6011082b

Strelka Workflow 0.0.2

--- a/libexec/filterSomaticVariants.pl	Fri Sep 26 14:33:07 2014 +0200
+++ b/libexec/filterSomaticVariants.pl	Fri Sep 26 15:51:35 2014 +0200
@@ -34,18 +34,15 @@
 
 my $baseDir;
 my $libDir;
-#my $vcftDir;
 BEGIN {
     my $thisDir=(File::Spec->splitpath($0))[1];
     $baseDir=File::Spec->catdir($thisDir,File::Spec->updir());
     $libDir=File::Spec->catdir($baseDir,'lib');
-    #my $optDir=File::Spec->catdir($baseDir,'opt');
-    #$vcftDir=File::Spec->catdir($optDir,'vcftools','lib','perl5','site_perl');
 }
 use lib $libDir;
 use Utils;
-#use lib $vcftDir;
-#use Vcf;
+use Vcf;
+print "all imported in filter";
 
 
 my $scriptName=(File::Spec->splitpath($0))[2];