Mercurial > repos > mini > strelka

diff strelka.xml @ 7:3e8541ece3c7

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trying to fix environment variable 0.0.1
author mini
date Fri, 26 Sep 2014 14:30:27 +0200
parents 87568e5a7d4f
children f66f23fcc83a
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line diff
--- a/strelka.xml	Fri Sep 26 13:24:13 2014 +0200
+++ b/strelka.xml	Fri Sep 26 14:30:27 2014 +0200
@@ -2,6 +2,7 @@
 
   <description>Strelka good interface but no dependencies</description>
   <requirements>
+    <requirement type="set_environment">SCRIPT_PATH</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
     <requirement type="package" version="0.1.11">vcftools</requirement>
   </requirements>
@@ -35,6 +36,7 @@
 	      --extraStrelkaArguments 		    $configuration.extra_arguments.extraStrelkaArguments
         #end if
    #end if
+        --scriptPath				\$SCRIPT_PATH
    </command>
 
    <inputs>