# HG changeset patch
# User mir-bioinf
# Date 1429562896 14400
# Node ID aa592c2c26cb0b93444b5725520e4afdfaca12fa
# Parent  746b5af0a9a242aef0f17c322da6c7d1c75359e9
Added output files and improved input file to test-data directory

diff -r 746b5af0a9a2 -r aa592c2c26cb heatmap_colormanipulation/.DS_Store
Binary file heatmap_colormanipulation/.DS_Store has changed
diff -r 746b5af0a9a2 -r aa592c2c26cb heatmap_colormanipulation/heatmap_extra_v2beta_VERSION.R
--- a/heatmap_colormanipulation/heatmap_extra_v2beta_VERSION.R	Mon Apr 20 15:55:30 2015 -0400
+++ b/heatmap_colormanipulation/heatmap_extra_v2beta_VERSION.R	Mon Apr 20 16:48:16 2015 -0400
@@ -31,7 +31,7 @@
 #Ylab <- args[19]
 
 stoptime = 0
-argIndex = 16
+argIndex = 15
 everything = args[argIndex]
 
 debugcounter = 0
diff -r 746b5af0a9a2 -r aa592c2c26cb heatmap_colormanipulation/test-data/NUL
diff -r 746b5af0a9a2 -r aa592c2c26cb heatmap_colormanipulation/test-data/heatmap_err_out1.txt
diff -r 746b5af0a9a2 -r aa592c2c26cb heatmap_colormanipulation/test-data/heatmap_extracolors_in1.tab
--- a/heatmap_colormanipulation/test-data/heatmap_extracolors_in1.tab	Mon Apr 20 15:55:30 2015 -0400
+++ b/heatmap_colormanipulation/test-data/heatmap_extracolors_in1.tab	Mon Apr 20 16:48:16 2015 -0400
@@ -1,40 +1,40 @@
 	MES_R1	MES_R2	CP_R1	CP_R2	CM_R1	CM_R2
 9930023K05Rik	1.04	3.24	0.01	2.06	2.52	1.72
-A4galt	64.07	64.13	56.77	46.42	9.47	14.77
-Ace	5.21	7.56	8.11	10.28	58.68	77.41
+A4galt	64.07	64.13	-56.77	46.42	-9.47	14.77
+Ace	5.21	7.56	8.11	10.28	-58.68	-77.41
 Actr3	94.84	76.57	85.83	74.3	16.12	99.82
-Actr3b	34.33	43.16	44.62	24.68	98.26	64.69
+Actr3b	-34.33	-43.16	-44.62	-24.68	-98.26	-64.69
 Adam34	0.01	0	0	0	0	0
 Adnp	8.17	0.36	27.6	21.28	22.32	72.76
 Amac1	2.08	5.4	2.02	1.03	3.35	4.3
-Asb3	0.77	44.11	58.32	11.61	88.08	64.64
-Asf1a	57.33	26.32	32.35	27.59	88.08	57.44
-AU021092	0	0	3.04	6.17	1.67	7.73
-Bahcc1	50.46	67.97	80.31	78.86	30.8	84.1
+Asb3	0.77	44.11	-58.32	11.61	-88.08	64.64
+Asf1a	57.33	26.32	-32.35	-27.59	88.08	57.44
+AU021092	0	0	3.04	-6.17	1.67	7.73
+Bahcc1	50.46	67.97	80.31	78.86	-30.8	84.1
 Bcl2a1d	0	0	1	0	1	0
 Ccdc40	95.58	34.39	14.58	49.98	62.8	58.42
-Chst9	0	0	1.01	1.03	0	0
+Chst9	0	0	-1.01	1.03	0	0
 Cphx	1.04	0	3.04	0	0	0
-Cyp26a1	75.25	44.44	15.9	89.6	2.52	0.86
-Dcaf4	57.32	55.04	46.66	0.98	20.44	22.59
-Dnajc13	31.99	31.77	56.95	34.65	36.6	77.76
-Dusp2	80.1	83.17	99.08	26.02	41.19	52.09
-Elf4	45.78	40.01	1.98	69	55.22	52.68
-Fdxacb1	43.56	55.54	20.66	12.1	56.21	84.21
+Cyp26a1	75.25	44.44	15.9	89.6	-2.52	0.86
+Dcaf4	57.32	55.04	-46.66	0.98	-20.44	22.59
+Dnajc13	31.99	31.77	56.95	34.65	-36.6	77.76
+Dusp2	80.1	83.17	-99.08	26.02	41.19	52.09
+Elf4	45.78	40.01	1.98	69	-55.22	52.68
+Fdxacb1	43.56	55.54	-20.66	12.1	-56.21	84.21
 Ganab	12.71	15.48	81.09	32.53	27.24	57.27
-Gm7616	1.17	1.15	0.71	2.13	4.51	2.78
+Gm7616	1.17	1.15	-0.71	2.13	-4.51	-2.78
 Grlf1	1.4	49.15	36.68	95.45	56.72	85.49
-Grwd1	77.35	3.83	32.4	1.09	25.6	44.04
+Grwd1	77.35	3.83	-32.4	1.09	25.6	44.04
 Il1rapl2	0	0.08	0	0	0	0
-Ippk	90.45	92.1	47.79	31.16	65.81	21.68
-Luc7l	89.97	20.02	76.71	68.3	89.65	73.67
-Med1	66.69	94.87	46.13	32.17	63.8	66.91
-Mlf2	30.27	79.06	20.31	86.77	25.24	10.88
+Ippk	90.45	92.1	47.79	31.16	65.81	-21.68
+Luc7l	89.97	20.02	-76.71	68.3	89.65	-73.67
+Med1	66.69	94.87	46.13	32.17	63.8	-66.91
+Mlf2	30.27	-79.06	-20.31	86.77	25.24	-10.88
 Mrgprb8	0	0	0.01	0	0	0
-Ncoa1	57.05	45.13	55.27	51.49	24.64	12.05
+Ncoa1	57.05	-45.13	55.27	51.49	-24.64	-12.05
 Ndc80	5.52	24.72	39.69	94.19	69.5	47.13
-Nkpd1	16.64	28.09	55.78	51.42	88.74	75.61
-Nr2c2	78.94	1.63	90.58	11.88	36.04	85.89
+Nkpd1	16.64	-28.09	55.78	51.42	-88.74	75.61
+Nr2c2	78.94	-1.63	90.58	-11.88	-36.04	85.89
 Pif1	81.99	92.94	51.59	70.76	6.01	54.13
 Raet1c	0.98	0	0	0	0.53	0
 Rnf7	55.49	30.38	16.26	10.74	90.98	40.75
diff -r 746b5af0a9a2 -r aa592c2c26cb heatmap_colormanipulation/test-data/heatmap_extracolors_out1.pdf
Binary file heatmap_colormanipulation/test-data/heatmap_extracolors_out1.pdf has changed