Mercurial > repos > mir-bioinf > heatmap_colormanipulation
changeset 1:746b5af0a9a2 draft
Updated files to fix dependency file
| author | mir-bioinf |
|---|---|
| date | Mon, 20 Apr 2015 15:55:30 -0400 |
| parents | 3797463c65f8 |
| children | aa592c2c26cb |
| files | heatmap_colormanipulation/heatmap_extra_v2beta_2.xml heatmap_colormanipulation/tool_dependencies.xml |
| diffstat | 2 files changed, 10 insertions(+), 6 deletions(-) [+] |
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--- a/heatmap_colormanipulation/heatmap_extra_v2beta_2.xml Mon Apr 20 15:26:53 2015 -0400 +++ b/heatmap_colormanipulation/heatmap_extra_v2beta_2.xml Mon Apr 20 15:55:30 2015 -0400 @@ -1,5 +1,9 @@ <tool id="heatmap_extra_v2_2" name="Heatmap with extra color options" version="1.0.1"> <description>based on R's heatmap.2 function.</description> + <requirements> + <requirement type="package" version="3.0.0">R</requirement> + <requirement type="package" version="2.12.1">gplots</requirement> + <requirements> <command>R --quiet --slave --file=heatmap_extra_v2beta_VERSION.R --args $input $rowvar.rowcorr $rowvar.rowlink $colvar.colcorr $colvar.collink $var_cols $scale $na_remove $header $rowheader $grad_style $col_min $col_max $out_file1 $main@$xlab@$ylab@ ZZZZ_END $ColorManip_outer.ColorManip #if $ColorManip_outer.ColorManip=="InnerClip" or $ColorManip_outer.ColorManip=="OuterClip": $ColorManip_outer.clipValLow
--- a/heatmap_colormanipulation/tool_dependencies.xml Mon Apr 20 15:26:53 2015 -0400 +++ b/heatmap_colormanipulation/tool_dependencies.xml Mon Apr 20 15:55:30 2015 -0400 @@ -1,16 +1,16 @@ <?xml version="1.0"?> <tool_dependency> - <package name="R" version="3.0.3"> - <repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="R_3_0_1" version="3.0.1"> + <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> - <package name="gtools" version="3.4.1"> + <package name="gplots" version="2.12.1"> <install version="1.0"> <actions> <action type="setup_r_environment"> - <repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="R" version="3.0.3" /> + <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="R_3_0_1" version="3.0.3" /> </repository> - <package>https://depot.galaxyproject.org/package/noarch/gtools_3.4.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/Archive/gplots/gplots_2.12.1.tar.gz</package> </action> </actions> </install>