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1 ==================================================
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2 Galaxy wrapper for InterProScan 5 prediction tools
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3 ==================================================
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4
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5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro
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6 member databases into one resource with look up of corresponding InterPro and GO annotation.
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7
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8 This wrapper is copyright 2013 by:
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9 * Bjoern Gruening
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10 * Konrad Paszkiewicz
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11
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12
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13 This prepository contains a wrapper for the InterProScan_ command line tool.
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14
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15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html
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16
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17
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18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120
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19
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20
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21 ============
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22 Installation
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23 ============
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24
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25 Please download install InterProScan according to:
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26
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27 https://code.google.com/p/interproscan/wiki/HowToDownload
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28
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29
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30 ========
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31 Citation
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32 ========
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33
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34 If you use this Galaxy tool in work leading to a scientific
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35 publication, in addition to citing the invididual underlying tools, please cite:
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36
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37 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
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38 Galaxy tools and workflows for sequence analysis with applications
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39 in molecular plant pathology. PeerJ 1:e167
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40 http://dx.doi.org/10.7717/peerj.167
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41
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42 Full reference information is included in the help text.
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43
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44
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45 =============
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46 Input formats
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47 =============
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48
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49 The standard interproscan input is either genomic or protein sequences.
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50 In the case of genomic sequences Interproscan will run an ORF prediction tool.
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51
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52
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53 =======
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54 History
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55 =======
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56
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57 interproscan:
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58
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59 - v5.0: Initial public release of version 5.0
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60
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61
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62 =============
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63 Licence (MIT)
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64 =============
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65
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66 Permission is hereby granted, free of charge, to any person obtaining a copy
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67 of this software and associated documentation files (the "Software"), to deal
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68 in the Software without restriction, including without limitation the rights
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69 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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70 copies of the Software, and to permit persons to whom the Software is
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71 furnished to do so, subject to the following conditions:
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72
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73 The above copyright notice and this permission notice shall be included in
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74 all copies or substantial portions of the Software.
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75
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76 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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77 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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78 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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79 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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80 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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81 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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82 THE SOFTWARE.
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83
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