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comparison interproscan5/fastabox.xml @ 6:3cb68964c2a8 draft

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Fixes on textarea format preservation.
author mkh
date Fri, 05 Feb 2016 13:04:03 -0500
parents b2fe58084928
children 1a4c5ab108fc
comparison
equal deleted inserted replaced
5:b2fe58084928 6:3cb68964c2a8
3 <requirements> 3 <requirements>
4 <requirement type="set_environment">INTERPROSCAN_SCRIPT_PATH</requirement> 4 <requirement type="set_environment">INTERPROSCAN_SCRIPT_PATH</requirement>
5 </requirements> 5 </requirements>
6 6
7 <command> 7 <command>
8 echo '$textbox' > $output 8 cp $fasta_file $output
9 </command> 9 </command>
10 10
11 <inputs> 11 <inputs>
12 <param name="dataset_label" type="text" size="60" label="Dataset label"/> 12 <param name="dataset_label" type="text" size="60" label="Dataset label"/>
13 <param name="textbox" type="text" area="True" size="20x60" label="FASTA formatted sequence(s)"/> 13 <param name="url_paste" type="text" area="True" size="20x60" label="FASTA formatted sequence(s)">
14 <sanitizer>
15 <valid initial="string.printable">
16 <remove value="&apos;"/>
17 </valid>
18 </sanitizer>
19 </param>
14 </inputs> 20 </inputs>
15 21
16 <outputs> 22 <outputs>
17 <data format="fasta" name="output" label="${dataset_label}"/> 23 <data format="fasta" name="output" label="${dataset_label}"/>
18 </outputs> 24 </outputs>
19 25
26 <configfiles>
27 <configfile name="fasta_file">
28 $url_paste
29 </configfile>
30 </configfiles>
31
20 <requirements> 32 <requirements>
21 </requirements> 33 </requirements>
22 34
23 <help> 35 <help><![CDATA[
24
25 **What it does** 36 **What it does**
26 37
27 Simply creates a FASTA dataset from a text input field. This is useful for a workflow where a tool needs a FASTA input, 38 Simply creates a FASTA dataset from a text input field. This is useful for a workflow where a tool needs a FASTA input,
28 and the user should not be required to get the dataset into their history by something more complicated 39 and the user should not be required to get the dataset into their history by something more complicated
29 than direct input. 40 than direct input.
39 ###### 50 ######
40 Output 51 Output
41 ###### 52 ######
42 53
43 A FASTA file. 54 A FASTA file.
55 ]]>
44 </help> 56 </help>
45 </tool> 57 </tool>