diff interproscan5/fastabox.xml @ 5:b2fe58084928 draft

Added fastabox uploader.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/interproscan5/fastabox.xml	Fri Feb 05 12:08:47 2016 -0500
@@ -0,0 +1,45 @@
+<tool id="fastabox" name="FASTA from text" version="1.0.0">
+    <description>Simple creation of FASTA file from text area field.</description>
+    <requirements>
+        <requirement type="set_environment">INTERPROSCAN_SCRIPT_PATH</requirement>
+    </requirements>
+
+    <command>
+        echo '$textbox' > $output
+    </command>
+
+    <inputs>
+        <param name="dataset_label" type="text" size="60" label="Dataset label"/>
+        <param name="textbox" type="text" area="True" size="20x60" label="FASTA formatted sequence(s)"/>
+    </inputs>
+
+    <outputs>
+        <data format="fasta" name="output" label="${dataset_label}"/>
+    </outputs>
+
+    <requirements>
+    </requirements>
+
+    <help>
+
+**What it does**
+
+Simply creates a FASTA dataset from a text input field. This is useful for a workflow where a tool needs a FASTA input,
+        and the user should not be required to get the dataset into their history by something more complicated
+        than direct input.
+
+
+#####
+Input
+#####
+
+Required is a FASTA formatted text containing protein or nucleotide sequences.
+
+
+######
+Output
+######
+
+A FASTA file.
+    </help>
+</tool>