Mercurial > repos > mkh > ips5
view interproscan5/data-p/__base__.xml @ 9:1d6b3be059c8 draft default tip
Name change. Removed redundant tool def.
| author | mkh |
|---|---|
| date | Mon, 08 Feb 2016 12:10:24 -0500 |
| parents | 74cf3f49f10c |
| children |
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?> <protein-matches xmlns="http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5"> <protein> <sequence md5="0d2c0f1acdd08ab0157f2308531a58e4">MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG</sequence> <xref desc="FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3" db="sp" id="P00363" name="Fumarate reductase flavoprotein subunit"/> <matches> <coils-match> <signature ac="Coil" name="Coil"> <signature-library-release library="COILS" version="2.2.1"/> </signature> <locations> <coils-location start="423" end="443"/> </locations> </coils-match> <coils-match> <signature ac="Coil" name="Coil"> <signature-library-release library="COILS" version="2.2.1"/> </signature> <locations> <coils-location start="473" end="493"/> </locations> </coils-match> <fingerprints-match evalue="2.5E-5" graphscan="I....I..."> <signature ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" name="PNDRDTASEI"> <models> <model ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" name="PNDRDTASEI"/> </models> <signature-library-release library="PRINTS" version="42.0"/> </signature> <locations> <fingerprints-location motifNumber="6" pvalue="0.0222" score="30.15" start="375" end="382"/> <fingerprints-location motifNumber="1" pvalue="4.15E-10" score="41.52" start="7" end="29"/> </locations> </fingerprints-match> <fingerprints-match evalue="3.0E-10" graphscan="I...I"> <signature ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"> <models> <model ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"/> </models> <signature-library-release library="PRINTS" version="42.0"/> </signature> <locations> <fingerprints-location motifNumber="1" pvalue="4.72E-9" score="47.18" start="8" end="27"/> <fingerprints-location motifNumber="5" pvalue="3.2E-8" score="30.52" start="360" end="382"/> </locations> </fingerprints-match> <hmmer3-match evalue="4.2E-250" score="829.0"> <signature ac="TIGR01812" desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" name="TIGR01812"> <entry ac="IPR014006" desc="Succinate dehydrogenase/fumarate reductase, flavoprotein subunit" name="Succ_Dhase_FrdA_Gneg" type="FAMILY"> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016627" name="oxidoreductase activity, acting on the CH-CH group of donors"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0022900" name="electron transport chain"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0050660" name="flavin adenine dinucleotide binding"/> <pathway-xref db="KEGG" id="00020+1.3.5.1" name="Citrate cycle (TCA cycle)"/> <pathway-xref db="KEGG" id="00650+1.3.5.1" name="Butanoate metabolism"/> <pathway-xref db="KEGG" id="00190+1.3.5.1" name="Oxidative phosphorylation"/> <pathway-xref db="MetaCyc" id="PWY-561" name="Superpathway of glyoxylate cycle and fatty acid degradation"/> <pathway-xref db="KEGG" id="00720+1.3.5.1" name="Carbon fixation pathways in prokaryotes"/> <pathway-xref db="MetaCyc" id="PWY-5690" name="TCA cycle II (plants and fungi)"/> <pathway-xref db="MetaCyc" id="PWY-7254" name="TCA cycle VII (acetate-producers)"/> <pathway-xref db="MetaCyc" id="PWY-6969" name="TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"/> <pathway-xref db="MetaCyc" id="PWY-6728" name="Methylaspartate cycle"/> <pathway-xref db="MetaCyc" id="PWY-4302" name="Aerobic respiration III (alternative oxidase pathway)"/> <pathway-xref db="MetaCyc" id="PWY-7279" name="Aerobic respiration II (cytochrome c) (yeast)"/> <pathway-xref db="MetaCyc" id="PWY-3781" name="Aerobic respiration I (cytochrome c)"/> </entry> <models> <model ac="TIGR01812" desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" name="TIGR01812"/> </models> <signature-library-release library="TIGRFAM" version="15.0"/> </signature> <locations> <hmmer3-location env-end="581" env-start="7" score="828.8" evalue="4.7E-250" hmm-start="1" hmm-end="568" hmm-length="0" start="7" end="581"/> </locations> </hmmer3-match> <hmmer3-match evalue="1.6E-37" score="127.8"> <signature ac="G3DSA:3.90.700.10"> <entry ac="IPR027477" desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> <models> <model ac="1y0pA03"/> <model ac="1jnrA02"/> <model ac="1chuA02"/> <model ac="2bs2A02"/> </models> <signature-library-release library="GENE3D" version="3.5.0"/> </signature> <locations> <hmmer3-location env-end="352" env-start="230" score="126.6" evalue="3.6E-37" hmm-start="1" hmm-end="107" hmm-length="0" start="234" end="352"/> </locations> </hmmer3-match> <hmmer3-match evalue="9.1E-39" score="131.9"> <signature ac="G3DSA:1.20.58.100"> <entry ac="IPR015939" desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> </entry> <models> <model ac="2bs2A03"/> <model ac="1kf6A03"/> <model ac="1knrA03"/> <model ac="2h88A03"/> <model ac="2wdqA03"/> <model ac="1jnrA03"/> <model ac="1chuA03"/> </models> <signature-library-release library="GENE3D" version="3.5.0"/> </signature> <locations> <hmmer3-location env-end="541" env-start="423" score="131.2" evalue="1.5E-38" hmm-start="4" hmm-end="115" hmm-length="0" start="426" end="537"/> </locations> </hmmer3-match> <hmmer3-match evalue="4.0E-106" score="354.2"> <signature ac="G3DSA:3.50.50.60"> <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> </entry> <models> <model ac="1chuA01"/> <model ac="1fl2A01"/> <model ac="1d5tA01"/> <model ac="1xdiA02"/> <model ac="1fecA02"/> <model ac="1w4xA01"/> <model ac="3c4nA01"/> <model ac="1jnrA01"/> <model ac="1xdiA01"/> <model ac="1sezA01"/> <model ac="2h88A01"/> <model ac="1ju2A01"/> <model ac="1trbA01"/> <model ac="3qvpA01"/> <model ac="2gv8A02"/> <model ac="1fcdA02"/> <model ac="1rsgB01"/> <model ac="2yquA02"/> <model ac="1b37A01"/> <model ac="1kdgA01"/> <model ac="2gf3A01"/> <model ac="1mo9A01"/> <model ac="1rsgA01"/> <model ac="2gqwA01"/> <model ac="1nhpA01"/> <model ac="2pyxA01"/> <model ac="3f8dA02"/> <model ac="2r9zA02"/> <model ac="2gqfA01"/> <model ac="1vg0A01"/> <model ac="1pj5A01"/> <model ac="2i0zA01"/> <model ac="1o94A03"/> <model ac="1rp0A02"/> <model ac="3gyjA01"/> <model ac="2eq6A02"/> <model ac="3dghA02"/> <model ac="1fcdA01"/> <model ac="1y0pA02"/> <model ac="1pn0A01"/> <model ac="1k0iA01"/> <model ac="2zbwA01"/> <model ac="1gteA03"/> <model ac="1nhpA02"/> <model ac="1xhcA01"/> <model ac="2iidA02"/> <model ac="1lqtA02"/> <model ac="3c4aA01"/> <model ac="3cgvA01"/> <model ac="3dghA01"/> <model ac="1mo9A02"/> <model ac="1fl2A02"/> <model ac="1onfA02"/> <model ac="3dk9A01"/> <model ac="2zbwA02"/> <model ac="1m6iA01"/> <model ac="2eq6A01"/> <model ac="1ps9A03"/> <model ac="1gteA04"/> <model ac="2qaeA02"/> <model ac="3fg2P02"/> <model ac="2gqwA02"/> <model ac="3dk9A02"/> <model ac="3fbsB01"/> <model ac="2gv8A01"/> <model ac="3o0hA01"/> <model ac="1s3eA01"/> <model ac="1ryiA01"/> <model ac="1m6iA02"/> <model ac="3kkjA01"/> <model ac="3fbsA02"/> <model ac="1q1rA01"/> </models> <signature-library-release library="GENE3D" version="3.5.0"/> </signature> <locations> <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" hmm-end="329" hmm-length="0" start="353" end="416"/> <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" hmm-end="329" hmm-length="0" start="2" end="233"/> </locations> </hmmer3-match> <hmmer3-match evalue="8.5E-43" score="144.0"> <signature ac="PIRSF000171" name="SDHA_APRA_LASPO"> <entry ac="IPR030664" desc="Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit" name="SdhA/FrdA/AprA" type="FAMILY"/> <models> <model ac="PIRSF000171" name="SDHA_APRA_LASPO"/> </models> <signature-library-release library="PIRSF" version="3.01"/> </signature> <locations> <hmmer3-location env-end="575" env-start="1" score="142.8" evalue="2.0E-42" hmm-start="3" hmm-end="565" hmm-length="0" start="1" end="575"/> </locations> </hmmer3-match> <hmmer3-match evalue="0.0" score="1214.6"> <signature ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" name="TIGR01176"> <entry ac="IPR005884" desc="Fumarate reductase, flavoprotein subunit" name="Fum_red_fp" type="FAMILY"> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0009061" name="anaerobic respiration"/> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> <pathway-xref db="KEGG" id="00650+1.3.5.4" name="Butanoate metabolism"/> <pathway-xref db="KEGG" id="00720+1.3.5.4" name="Carbon fixation pathways in prokaryotes"/> <pathway-xref db="KEGG" id="00620+1.3.5.4" name="Pyruvate metabolism"/> <pathway-xref db="MetaCyc" id="PWY-5913" name="Partial TCA cycle (obligate autotrophs)"/> <pathway-xref db="KEGG" id="00020+1.3.5.4" name="Citrate cycle (TCA cycle)"/> <pathway-xref db="MetaCyc" id="PWY-7384" name="Anaerobic energy metabolism (invertebrates, mitochondrial)"/> <pathway-xref db="MetaCyc" id="PWY-5392" name="Reductive TCA cycle II"/> </entry> <models> <model ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" name="TIGR01176"/> </models> <signature-library-release library="TIGRFAM" version="15.0"/> </signature> <locations> <hmmer3-location env-end="582" env-start="3" score="1214.4" evalue="0.0" hmm-start="1" hmm-end="580" hmm-length="0" start="3" end="582"/> </locations> </hmmer3-match> <hmmer3-match evalue="4.2E-39" score="133.1"> <signature ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"> <entry ac="IPR015939" desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> </entry> <models> <model ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"/> </models> <signature-library-release library="PFAM" version="28.0"/> </signature> <locations> <hmmer3-location env-end="581" env-start="453" score="132.4" evalue="7.0E-39" hmm-start="1" hmm-end="128" hmm-length="0" start="453" end="581"/> </locations> </hmmer3-match> <hmmer3-match evalue="2.3E-18" score="65.2"> <signature ac="G3DSA:4.10.80.40"> <models> <model ac="1kf6A04"/> <model ac="2h88A04"/> <model ac="2wdqA04"/> </models> <signature-library-release library="GENE3D" version="3.5.0"/> </signature> <locations> <hmmer3-location env-end="577" env-start="543" score="64.1" evalue="5.5E-18" hmm-start="1" hmm-end="35" hmm-length="0" start="543" end="577"/> </locations> </hmmer3-match> <hmmer3-match evalue="1.1E-115" score="386.8"> <signature ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"> <entry ac="IPR003953" desc="FAD-dependent oxidoreductase 2, FAD binding domain" name="FAD-binding_2" type="DOMAIN"/> <models> <model ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"/> </models> <signature-library-release library="PFAM" version="28.0"/> </signature> <locations> <hmmer3-location env-end="397" env-start="7" score="386.8" evalue="1.1E-115" hmm-start="1" hmm-end="417" hmm-length="0" start="7" end="397"/> </locations> </hmmer3-match> <panther-match evalue="0.0" familyName="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT" score="1520.5"> <signature ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"> <models> <model ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"/> </models> <signature-library-release library="PANTHER" version="10.0"/> </signature> <locations> <panther-location start="1" end="584"/> </locations> </panther-match> <panther-match evalue="0.0" familyName="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT" score="1520.5"> <signature ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"> <models> <model ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"/> </models> <signature-library-release library="PANTHER" version="10.0"/> </signature> <locations> <panther-location start="1" end="584"/> </locations> </panther-match> <patternscan-match> <signature ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." name="FRD_SDH_FAD_BINDING"> <entry ac="IPR003952" desc="Fumarate reductase/succinate dehydrogenase, FAD-binding site" name="FRD_SDH_FAD_BS" type="BINDING_SITE"> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> </entry> <models> <model ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." name="FRD_SDH_FAD_BINDING"/> </models> <signature-library-release library="PROSITE_PATTERNS" version="20.113"/> </signature> <locations> <patternscan-location level="STRONG" start="43" end="52"> <alignment>RSHTvaAeGG</alignment> </patternscan-location> </locations> </patternscan-match> <superfamilyhmmer3-match evalue="2.27E-71"> <signature ac="SSF51905" name="FAD/NAD(P)-binding domain"> <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> </entry> <models> <model ac="0048494" name="FAD/NAD(P)-binding domain"/> <model ac="0052964" name="FAD/NAD(P)-binding domain"/> <model ac="0038468" name="FAD/NAD(P)-binding domain"/> <model ac="0050363" name="FAD/NAD(P)-binding domain"/> <model ac="0052600" name="FAD/NAD(P)-binding domain"/> <model ac="0048009" name="FAD/NAD(P)-binding domain"/> <model ac="0045798" name="FAD/NAD(P)-binding domain"/> <model ac="0053857" name="FAD/NAD(P)-binding domain"/> <model ac="0052313" name="FAD/NAD(P)-binding domain"/> <model ac="0047270" name="FAD/NAD(P)-binding domain"/> <model ac="0045519" name="FAD/NAD(P)-binding domain"/> <model ac="0048583" name="FAD/NAD(P)-binding domain"/> <model ac="0044705" name="FAD/NAD(P)-binding domain"/> <model ac="0050364" name="FAD/NAD(P)-binding domain"/> <model ac="0050960" name="FAD/NAD(P)-binding domain"/> <model ac="0046270" name="FAD/NAD(P)-binding domain"/> <model ac="0047022" name="FAD/NAD(P)-binding domain"/> <model ac="0036889" name="FAD/NAD(P)-binding domain"/> <model ac="0047564" name="FAD/NAD(P)-binding domain"/> <model ac="0040688" name="FAD/NAD(P)-binding domain"/> <model ac="0046274" name="FAD/NAD(P)-binding domain"/> <model ac="0036016" name="FAD/NAD(P)-binding domain"/> <model ac="0046416" name="FAD/NAD(P)-binding domain"/> <model ac="0037643" name="FAD/NAD(P)-binding domain"/> <model ac="0054879" name="FAD/NAD(P)-binding domain"/> <model ac="0044413" name="FAD/NAD(P)-binding domain"/> <model ac="0038285" name="FAD/NAD(P)-binding domain"/> <model ac="0040660" name="FAD/NAD(P)-binding domain"/> <model ac="0040619" name="FAD/NAD(P)-binding domain"/> <model ac="0046128" name="FAD/NAD(P)-binding domain"/> <model ac="0046972" name="FAD/NAD(P)-binding domain"/> <model ac="0046973" name="FAD/NAD(P)-binding domain"/> <model ac="0047682" name="FAD/NAD(P)-binding domain"/> <model ac="0040602" name="FAD/NAD(P)-binding domain"/> <model ac="0047271" name="FAD/NAD(P)-binding domain"/> <model ac="0040049" name="FAD/NAD(P)-binding domain"/> <model ac="0052032" name="FAD/NAD(P)-binding domain"/> <model ac="0052911" name="FAD/NAD(P)-binding domain"/> <model ac="0036301" name="FAD/NAD(P)-binding domain"/> <model ac="0046446" name="FAD/NAD(P)-binding domain"/> <model ac="0042446" name="FAD/NAD(P)-binding domain"/> <model ac="0044098" name="FAD/NAD(P)-binding domain"/> <model ac="0047029" name="FAD/NAD(P)-binding domain"/> <model ac="0048584" name="FAD/NAD(P)-binding domain"/> <model ac="0052926" name="FAD/NAD(P)-binding domain"/> <model ac="0048200" name="FAD/NAD(P)-binding domain"/> <model ac="0036654" name="FAD/NAD(P)-binding domain"/> <model ac="0048365" name="FAD/NAD(P)-binding domain"/> <model ac="0048045" name="FAD/NAD(P)-binding domain"/> <model ac="0035989" name="FAD/NAD(P)-binding domain"/> <model ac="0045518" name="FAD/NAD(P)-binding domain"/> <model ac="0036300" name="FAD/NAD(P)-binding domain"/> <model ac="0048865" name="FAD/NAD(P)-binding domain"/> <model ac="0049150" name="FAD/NAD(P)-binding domain"/> <model ac="0046344" name="FAD/NAD(P)-binding domain"/> <model ac="0046514" name="FAD/NAD(P)-binding domain"/> <model ac="0047565" name="FAD/NAD(P)-binding domain"/> <model ac="0054159" name="FAD/NAD(P)-binding domain"/> <model ac="0046750" name="FAD/NAD(P)-binding domain"/> <model ac="0038449" name="FAD/NAD(P)-binding domain"/> <model ac="0046761" name="FAD/NAD(P)-binding domain"/> <model ac="0046760" name="FAD/NAD(P)-binding domain"/> <model ac="0036092" name="FAD/NAD(P)-binding domain"/> <model ac="0047133" name="FAD/NAD(P)-binding domain"/> <model ac="0039664" name="FAD/NAD(P)-binding domain"/> <model ac="0041341" name="FAD/NAD(P)-binding domain"/> <model ac="0041940" name="FAD/NAD(P)-binding domain"/> <model ac="0048199" name="FAD/NAD(P)-binding domain"/> <model ac="0046751" name="FAD/NAD(P)-binding domain"/> <model ac="0050961" name="FAD/NAD(P)-binding domain"/> <model ac="0045881" name="FAD/NAD(P)-binding domain"/> <model ac="0043577" name="FAD/NAD(P)-binding domain"/> <model ac="0047068" name="FAD/NAD(P)-binding domain"/> <model ac="0053322" name="FAD/NAD(P)-binding domain"/> <model ac="0054729" name="FAD/NAD(P)-binding domain"/> <model ac="0052963" name="FAD/NAD(P)-binding domain"/> <model ac="0049222" name="FAD/NAD(P)-binding domain"/> <model ac="0050927" name="FAD/NAD(P)-binding domain"/> <model ac="0050148" name="FAD/NAD(P)-binding domain"/> <model ac="0037441" name="FAD/NAD(P)-binding domain"/> <model ac="0048866" name="FAD/NAD(P)-binding domain"/> <model ac="0048771" name="FAD/NAD(P)-binding domain"/> <model ac="0048356" name="FAD/NAD(P)-binding domain"/> <model ac="0053321" name="FAD/NAD(P)-binding domain"/> <model ac="0049003" name="FAD/NAD(P)-binding domain"/> <model ac="0048607" name="FAD/NAD(P)-binding domain"/> <model ac="0038074" name="FAD/NAD(P)-binding domain"/> <model ac="0048108" name="FAD/NAD(P)-binding domain"/> <model ac="0047712" name="FAD/NAD(P)-binding domain"/> <model ac="0048364" name="FAD/NAD(P)-binding domain"/> <model ac="0046579" name="FAD/NAD(P)-binding domain"/> <model ac="0046834" name="FAD/NAD(P)-binding domain"/> <model ac="0045870" name="FAD/NAD(P)-binding domain"/> <model ac="0049930" name="FAD/NAD(P)-binding domain"/> <model ac="0045797" name="FAD/NAD(P)-binding domain"/> <model ac="0054078" name="FAD/NAD(P)-binding domain"/> <model ac="0040035" name="FAD/NAD(P)-binding domain"/> <model ac="0053967" name="FAD/NAD(P)-binding domain"/> <model ac="0049679" name="FAD/NAD(P)-binding domain"/> </models> <signature-library-release library="SUPERFAMILY" version="1.75"/> </signature> <locations> <superfamilyhmmer3-location start="361" end="415"/> <superfamilyhmmer3-location start="2" end="250"/> </locations> </superfamilyhmmer3-match> <superfamilyhmmer3-match evalue="3.01E-46"> <signature ac="SSF46977" name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"> <entry ac="IPR015939" desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> </entry> <models> <model ac="0035988" name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> <model ac="0048345" name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> <model ac="0052031" name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> <model ac="0040048" name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> <model ac="0039663" name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> </models> <signature-library-release library="SUPERFAMILY" version="1.75"/> </signature> <locations> <superfamilyhmmer3-location start="444" end="590"/> </locations> </superfamilyhmmer3-match> <superfamilyhmmer3-match evalue="6.88E-43"> <signature ac="SSF56425" name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic 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</models> <signature-library-release library="SUPERFAMILY" version="1.75"/> </signature> <locations> <superfamilyhmmer3-location start="227" end="358"/> </locations> </superfamilyhmmer3-match> </matches> </protein> <protein> <sequence md5="abfa044baa298f169ea62ac6b48e1185">MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES</sequence> <xref desc="SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1" db="sp" id="C1P5Z7" name="Putative inhibitor of glucose uptake transporter SgrT"/> <matches> <hmmer3-match evalue="8.8E-12" score="44.3"> <signature ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"> <entry ac="IPR031767" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT" type="FAMILY"> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0046325" name="negative regulation of glucose import"/> </entry> <models> <model ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"/> </models> <signature-library-release library="PFAM" version="28.0"/> </signature> <locations> <hmmer3-location env-end="41" env-start="1" score="44.0" evalue="1.0E-11" hmm-start="2" hmm-end="39" hmm-length="0" start="2" end="37"/> </locations> </hmmer3-match> </matches> </protein> <protein> <sequence md5="9ec8e26fcf5c160f533bf9a69dec0212">MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI</sequence> <xref desc="DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1" db="sp" id="P00370" name="NADP-specific glutamate dehydrogenase"/> <matches> 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end="128"/> <fingerprints-location motifNumber="3" pvalue="6.51E-10" score="43.54" start="235" end="255"/> <fingerprints-location motifNumber="2" pvalue="6.22E-15" score="57.39" start="193" end="215"/> </locations> </fingerprints-match> <hmmer2-match evalue="2.0E-93" score="326.3"> <signature ac="SM00839" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" name="ELFV_dehydrog"> <entry ac="IPR006096" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal" name="Glu/Leu/Phe/Val_DH_C" type="DOMAIN"> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" name="cellular amino acid metabolic process"/> </entry> <models> <model ac="SM00839" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" name="ELFV_dehydrog"/> </models> <signature-library-release library="SMART" version="6.2"/> </signature> <locations> <hmmer2-location score="326.3" evalue="2.0E-93" hmm-start="1" hmm-end="265" hmm-length="0" start="204" end="445"/> </locations> </hmmer2-match> <hmmer3-match evalue="3.9E-61" score="204.1"> <signature ac="G3DSA:3.40.192.10"> <models> <model ac="1vi2A01"/> <model ac="2hk9A01"/> <model ac="2d5cA01"/> <model ac="1c1dA01"/> <model ac="1gtmA01"/> <model ac="3o8qA01"/> <model ac="1lehA01"/> <model ac="3donA01"/> <model ac="1a4iA02"/> <model ac="1bgvA02"/> <model ac="1edzA02"/> <model ac="1npyA01"/> <model ac="1p77A01"/> </models> <signature-library-release library="GENE3D" version="3.5.0"/> </signature> <locations> <hmmer3-location env-end="190" env-start="55" score="202.7" evalue="1.0E-60" hmm-start="2" hmm-end="134" hmm-length="0" start="68" end="188"/> </locations> </hmmer3-match> <hmmer3-match evalue="9.5E-88" score="293.6"> <signature ac="PF00208" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" name="ELFV_dehydrog"> 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hmm-length="0" start="373" end="446"/> </locations> </hmmer3-match> <hmmer3-match evalue="2.9E-49" score="165.8"> <signature ac="PF02812" desc="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain" name="ELFV_dehydrog_N"> <entry ac="IPR006097" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain" name="Glu/Leu/Phe/Val_DH_dimer_dom" type="DOMAIN"> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" name="oxidation-reduction process"/> <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" name="cellular amino acid metabolic process"/> <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> </entry> <models> <model ac="PF02812" desc="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain" name="ELFV_dehydrog_N"/> </models> <signature-library-release library="PFAM" version="28.0"/> </signature> <locations> <hmmer3-location env-end="185" env-start="57" score="164.8" evalue="6.3E-49" hmm-start="1" hmm-end="129" hmm-length="0" start="57" end="184"/> </locations> </hmmer3-match> <panther-match evalue="3.2E-250" familyName="GLUTAMATE DEHYDROGENASE" score="842.1"> <signature ac="PTHR11606" name="GLUTAMATE DEHYDROGENASE"> <models> <model ac="PTHR11606" name="GLUTAMATE DEHYDROGENASE"/> </models> <signature-library-release library="PANTHER" version="10.0"/> </signature> <locations> <panther-location start="1" end="447"/> </locations> </panther-match> <panther-match evalue="3.2E-250" familyName="NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED" score="842.1"> <signature ac="PTHR11606:SF4" name="NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED"> <models> <model ac="PTHR11606:SF4" name="NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED"/> </models> <signature-library-release library="PANTHER" version="10.0"/> </signature> <locations> <panther-location start="1" end="447"/> </locations> </panther-match> <patternscan-match> <signature ac="PS00074" desc="Glu / Leu / Phe / Val dehydrogenases active site." 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