Mercurial > repos > mkh > ips5
changeset 3:74cf3f49f10c draft
Better HTML index.
| author | mkh |
|---|---|
| date | Tue, 02 Feb 2016 12:27:19 -0500 |
| parents | d1d34608dba0 |
| children | 6574eb46426d |
| files | interproscan5/create_html_index.py interproscan5/data-d/__base__.gff3 interproscan5/data-d/__base__.html.tar.gz interproscan5/data-d/__base__.svg.tar.gz interproscan5/data-d/__base__.tsv interproscan5/data-d/__base__.xml interproscan5/data-d/input.fasta interproscan5/data-p/__base__.gff3 interproscan5/data-p/__base__.html.tar.gz interproscan5/data-p/__base__.svg.tar.gz interproscan5/data-p/__base__.tsv interproscan5/data-p/__base__.xml interproscan5/data-p/input.fasta interproscan5/data/__base__.gff3 interproscan5/data/__base__.html.tar.gz interproscan5/data/__base__.svg.tar.gz interproscan5/data/__base__.tsv interproscan5/data/__base__.xml interproscan5/data/input.fasta interproscan5/fake_ips.py interproscan5/ips5.xml interproscan5/ipsfaux.xml |
| diffstat | 22 files changed, 5496 insertions(+), 2700 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/create_html_index.py Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,112 @@ +#!/usr/bin/env python + +import os +import re +import sys + +START = '''<html> +<head> +<style> + a:link { text-decoration: none; color: red; } + a:visited { text-decoration: none; color: blue; } + a:hover { text-decoration: underline; color: green; } a:active { text-decoration: underline; color: green; } +</style> +</head> +<body> +<h1>InterProScan result summary page</h1> +''' + +END = ''' +</body> +</html> +''' + + +def raw_mode(html_file, directory): + with open(html_file, 'w') as h: + h.write(START) + h.write('<ul>') + for filename in [f for f in sorted(os.listdir(directory)) if os.path.isfile(os.path.join(directory, f))]: + h.write('<li><a href="%s"> %s </a></li>' % (filename, os.path.splitext(filename)[0])) + h.write('</ul>') + h.write(END) + + +def fix_name(name): + return re.sub('[&/]', '_', name) + + +def cooked_mode(orfed_ids, tsv_file, html_file, directory): + name_freq = {} + with open(tsv_file) as f: + for line in f: + name = line.split("\t", 1)[0] + if orfed_ids: + deorfed_name = re.sub('_\\d+$', '', name) + else: + deorfed_name = name + + data = name_freq.get(deorfed_name, []) + if data: + data[0] += 1 + data[1][name] = data[1].get(name, 0) + 1 + else: + data = [1, {name: 1}] + name_freq[deorfed_name] = data + + name_freq_sorted = [(x[0], (x[1][0], sorted(x[1][1].items(), key=lambda t: t[1], reverse=True))) + for x in sorted(name_freq.items(), key=lambda t: t[1][0], reverse=True) + ] + + filename_dict = {} + for filename in [f for f in os.listdir(directory) if os.path.isfile(os.path.join(directory, f))]: + filename_dict[os.path.splitext(filename)[0]] = filename + + with open(html_file, 'w') as h: + h.write(START) + h.write('<ol>') + for don, (freq, members) in name_freq_sorted: + h.write('\n<li>') + if len(members) == 1: + fn = fix_name(members[0][0]) + if fn in filename_dict: + h.write('<a href="%s"> %s (%d features)</a>' % + (filename_dict[fn], members[0][0], members[0][1])) + del filename_dict[fn] + else: + h.write('<a href="%s"> %s (%d features, broken link!)</a>' % + (members[0][0], members[0][0], members[0][1])) + else: + h.write('%s (%d features)' % (don, freq)) + h.write('\n<ul>') + for n, f in members: + fn = fix_name(n) + if fn in filename_dict: + h.write('\n<li><a href="%s"> %s (%d features)</a></li>' % (filename_dict[fn], n, f)) + del filename_dict[fn] + else: + h.write('\n<li><a href="%s"> %s (%d features, broken link!)</a></li>' % (n, n, f)) + h.write('</ul>') + h.write('</li>') + + if len(filename_dict) > 0: + h.write('<h2>Sequences without any features</h2>') + h.write('\n<ul>') + for n, p in sorted(filename_dict.items(), key=lambda t: t[0]): + h.write('\n<li><a href="%s">%s</li>' % (p, n)) + h.write('</ul>') + h.write('</ol>') + h.write(END) + + +def main(): + if len(sys.argv) == 3: + raw_mode(sys.argv[1], sys.argv[2]) + elif len(sys.argv) == 5: + cooked_mode(sys.argv[1] != '0', sys.argv[2], sys.argv[3], sys.argv[4]) + else: + print('Args must be "html_file directory" or "[0|1] tsv_file html_file directory"') + sys.exit(1) + + +main()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-d/__base__.gff3 Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,377 @@ +##gff-version 3 +##feature-ontology http://song.cvs.sourceforge.net/viewvc/song/ontology/sofa.obo?revision=1.269 +##sequence-region P00363 1 602 +P00363 . polypeptide 1 602 . + . md5=0d2c0f1acdd08ab0157f2308531a58e4;ID=P00363 +P00363 SUPERFAMILY protein_match 361 415 2.27E-71 + . Name=SSF51905;Target=P00363 361 415;status=T;ID=match$1_361_415;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 SUPERFAMILY protein_match 2 250 2.27E-71 + . Name=SSF51905;Target=P00363 2 250;status=T;ID=match$1_2_250;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 TIGRFAM protein_match 7 581 4.7E-250 + . Name=TIGR01812;signature_desc=sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit;Target=P00363 7 581;status=T;ID=match$2_7_581;Ontology_term="GO:0016627","GO:0022900","GO:0050660","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR014006" +P00363 Gene3D protein_match 234 352 3.6E-37 + . Name=G3DSA:3.90.700.10;Target=P00363 234 352;status=T;ID=match$3_234_352;date=24-01-2016;Dbxref="InterPro:IPR027477" +P00363 PRINTS protein_match 375 382 2.5E-5 + . Name=PR00411;signature_desc=Pyridine nucleotide disulphide reductase class-I signature;Target=P00363 375 382;status=T;ID=match$4_375_382;date=24-01-2016 +P00363 PRINTS protein_match 7 29 2.5E-5 + . Name=PR00411;signature_desc=Pyridine nucleotide disulphide reductase class-I signature;Target=P00363 7 29;status=T;ID=match$4_7_29;date=24-01-2016 +P00363 Gene3D protein_match 426 537 1.5E-38 + . Name=G3DSA:1.20.58.100;Target=P00363 426 537;status=T;ID=match$5_426_537;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" +P00363 Coils protein_match 423 443 . + . Name=Coil;Target=P00363 423 443;status=T;ID=match$6_423_443;date=24-01-2016 +P00363 Gene3D protein_match 353 416 5.9E-106 + . Name=G3DSA:3.50.50.60;Target=P00363 353 416;status=T;ID=match$7_353_416;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 Gene3D protein_match 2 233 5.9E-106 + . Name=G3DSA:3.50.50.60;Target=P00363 2 233;status=T;ID=match$7_2_233;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 PANTHER protein_match 1 584 0.0 + . Name=PTHR11632;Target=P00363 1 584;status=T;ID=match$8_1_584;date=24-01-2016 +P00363 SUPERFAMILY protein_match 444 590 3.01E-46 + . Name=SSF46977;Target=P00363 444 590;status=T;ID=match$9_444_590;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" +P00363 PANTHER protein_match 1 584 0.0 + . Name=PTHR11632:SF50;Target=P00363 1 584;status=T;ID=match$10_1_584;date=24-01-2016 +P00363 PIRSF protein_match 1 575 2.0E-42 + . Name=PIRSF000171;Target=P00363 1 575;status=T;ID=match$11_1_575;date=24-01-2016;Dbxref="InterPro:IPR030664" +P00363 TIGRFAM protein_match 3 582 0.0 + . Name=TIGR01176;signature_desc=fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit;Target=P00363 3 582;status=T;ID=match$12_3_582;Ontology_term="GO:0009061","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR005884" +P00363 Pfam protein_match 453 581 7.0E-39 + . Name=PF02910;signature_desc=Fumarate reductase flavoprotein C-term;Target=P00363 453 581;status=T;ID=match$13_453_581;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" +P00363 Coils protein_match 473 493 . + . Name=Coil;Target=P00363 473 493;status=T;ID=match$14_473_493;date=24-01-2016 +P00363 ProSitePatterns protein_match 43 52 . + . Name=PS00504;signature_desc=Fumarate reductase / succinate dehydrogenase FAD-binding site.;Target=P00363 43 52;status=T;ID=match$15_43_52;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR003952" +P00363 Gene3D protein_match 543 577 5.5E-18 + . Name=G3DSA:4.10.80.40;Target=P00363 543 577;status=T;ID=match$16_543_577;date=24-01-2016 +P00363 SUPERFAMILY protein_match 227 358 6.88E-43 + . Name=SSF56425;Target=P00363 227 358;status=T;ID=match$17_227_358;date=24-01-2016;Dbxref="InterPro:IPR027477" +P00363 Pfam protein_match 7 397 1.1E-115 + . Name=PF00890;signature_desc=FAD binding domain;Target=P00363 7 397;status=T;ID=match$18_7_397;date=24-01-2016;Dbxref="InterPro:IPR003953" +P00363 PRINTS protein_match 8 27 3.0E-10 + . Name=PR00368;signature_desc=FAD-dependent pyridine nucleotide reductase signature;Target=P00363 8 27;status=T;ID=match$19_8_27;date=24-01-2016 +P00363 PRINTS protein_match 360 382 3.0E-10 + . Name=PR00368;signature_desc=FAD-dependent pyridine nucleotide reductase signature;Target=P00363 360 382;status=T;ID=match$19_360_382;date=24-01-2016 +##sequence-region P00350 1 468 +P00350 . polypeptide 1 468 . + . md5=1776f92beb74ff0ccd9ac47a65663644;ID=P00350 +P00350 SUPERFAMILY protein_match 4 173 4.86E-50 + . Name=SSF51735;Target=P00350 4 173;status=T;ID=match$20_4_173;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00350 TIGRFAM protein_match 5 467 1.1E-232 + . Name=TIGR00873;signature_desc=gnd: 6-phosphogluconate dehydrogenase (decarboxylating);Target=P00350 5 467;status=T;ID=match$21_5_467;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006113" +P00350 Gene3D protein_match 1 180 1.9E-61 + . Name=G3DSA:3.40.50.720;Target=P00350 1 180;status=T;ID=match$22_1_180;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00350 Pfam protein_match 3 174 1.8E-52 + . Name=PF03446;signature_desc=NAD binding domain of 6-phosphogluconate dehydrogenase;Target=P00350 3 174;status=T;ID=match$23_3_174;Ontology_term="GO:0004616","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006115" +P00350 PIRSF protein_match 1 468 1.9E-243 + . Name=PIRSF000109;Target=P00350 1 468;status=T;ID=match$24_1_468;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006113" +P00350 ProSitePatterns protein_match 253 265 . + . Name=PS00461;signature_desc=6-phosphogluconate dehydrogenase signature.;Target=P00350 253 265;status=T;ID=match$25_253_265;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006184" +P00350 Gene3D protein_match 181 433 1.0E-119 + . Name=G3DSA:1.10.1040.10;Target=P00350 181 433;status=T;ID=match$26_181_433;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR013328" +P00350 Gene3D protein_match 436 467 1.4E-22 + . Name=G3DSA:1.20.5.320;Target=P00350 436 467;status=T;ID=match$27_436_467;date=24-01-2016;Dbxref="InterPro:IPR012284" +P00350 PRINTS protein_match 249 276 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 249 276;status=T;ID=match$28_249_276;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 168 196 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 168 196;status=T;ID=match$28_168_196;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 66 95 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 66 95;status=T;ID=match$28_66_95;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 119 144 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 119 144;status=T;ID=match$28_119_144;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 4 27 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 4 27;status=T;ID=match$28_4_27;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 356 378 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 356 378;status=T;ID=match$28_356_378;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PANTHER protein_match 1 466 7.6E-305 + . Name=PTHR11811:SF25;Target=P00350 1 466;status=T;ID=match$29_1_466;date=24-01-2016 +P00350 PANTHER protein_match 1 466 7.6E-305 + . Name=PTHR11811;Target=P00350 1 466;status=T;ID=match$30_1_466;date=24-01-2016 +P00350 Pfam protein_match 179 466 2.0E-132 + . Name=PF00393;signature_desc=6-phosphogluconate dehydrogenase, C-terminal domain;Target=P00350 179 466;status=T;ID=match$31_179_466;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006114" +P00350 SUPERFAMILY protein_match 177 467 6.8E-132 + . Name=SSF48179;Target=P00350 177 467;status=T;ID=match$32_177_467;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR008927" +##sequence-region P00370 1 447 +P00370 . polypeptide 1 447 . + . md5=9ec8e26fcf5c160f533bf9a69dec0212;ID=P00370 +P00370 PRINTS protein_match 372 383 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 372 383;status=T;ID=match$33_372_383;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 PRINTS protein_match 114 128 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 114 128;status=T;ID=match$33_114_128;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 PRINTS protein_match 235 255 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 235 255;status=T;ID=match$33_235_255;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 PRINTS protein_match 193 215 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 193 215;status=T;ID=match$33_193_215;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 SUPERFAMILY protein_match 6 196 6.72E-74 + . Name=SSF53223;Target=P00370 6 196;status=T;ID=match$34_6_196;date=24-01-2016 +P00370 Gene3D protein_match 68 188 1.0E-60 + . Name=G3DSA:3.40.192.10;Target=P00370 68 188;status=T;ID=match$35_68_188;date=24-01-2016 +P00370 Pfam protein_match 202 445 1.3E-87 + . Name=PF00208;signature_desc=Glutamate/Leucine/Phenylalanine/Valine dehydrogenase;Target=P00370 202 445;status=T;ID=match$36_202_445;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006096" +P00370 PIRSF protein_match 22 447 1.8E-114 + . Name=PIRSF000185;Target=P00370 22 447;status=T;ID=match$37_22_447;Ontology_term="GO:0016639","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR014362" +P00370 SMART protein_match 204 445 2.0E-93 + . Name=SM00839;signature_desc=Glutamate/Leucine/Phenylalanine/Valine dehydrogenase;Target=P00370 204 445;status=T;ID=match$38_204_445;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006096" +P00370 Gene3D protein_match 209 372 1.6E-63 + . Name=G3DSA:3.40.50.720;Target=P00370 209 372;status=T;ID=match$39_209_372;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00370 SUPERFAMILY protein_match 202 446 4.96E-77 + . Name=SSF51735;Target=P00370 202 446;status=T;ID=match$40_202_446;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00370 Gene3D protein_match 7 67 8.2E-28 + . Name=G3DSA:1.10.285.10;Target=P00370 7 67;status=T;ID=match$41_7_67;date=24-01-2016 +P00370 Gene3D protein_match 373 446 2.0E-26 + . Name=G3DSA:1.10.285.10;Target=P00370 373 446;status=T;ID=match$41_373_446;date=24-01-2016 +P00370 ProSitePatterns protein_match 122 135 . + . Name=PS00074;signature_desc=Glu / Leu / Phe / Val dehydrogenases active site.;Target=P00370 122 135;status=T;ID=match$42_122_135;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 Pfam protein_match 57 184 6.3E-49 + . Name=PF02812;signature_desc=Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;Target=P00370 57 184;status=T;ID=match$43_57_184;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006097" +P00370 PANTHER protein_match 1 447 3.2E-250 + . Name=PTHR11606;Target=P00370 1 447;status=T;ID=match$44_1_447;date=24-01-2016 +P00370 PANTHER protein_match 1 447 3.2E-250 + . Name=PTHR11606:SF4;Target=P00370 1 447;status=T;ID=match$45_1_447;date=24-01-2016 +##sequence-region C1P5Z7 1 43 +C1P5Z7 . polypeptide 1 43 . + . md5=abfa044baa298f169ea62ac6b48e1185;ID=C1P5Z7 +C1P5Z7 Pfam protein_match 2 37 1.0E-11 + . Name=PF15894;signature_desc=Inhibitor of glucose uptake transporter SgrT;Target=C1P5Z7 2 37;status=T;ID=match$46_2_37;Ontology_term="GO:0046325";date=24-01-2016;Dbxref="InterPro:IPR031767" +##FASTA +>C1P5Z7 +MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES +>P00350 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD +>P00363 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA +NG +>P00370 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI +>match$1_2_250 +QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD +SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK +IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL +VQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSG +ILMTEGCRG +>match$1_361_415 +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERA +>match$2_7_581 +DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYH +FHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTW +FAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRA +NAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE +GCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS +TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ +NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAI +EAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQER +FKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDV +NFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVY +>match$3_234_352 +PTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQ +AFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVR +>match$4_7_29 +DLAIVGAGGAGLRAAIAAAQANP +>match$4_375_382 +LFAVGECS +>match$5_426_537 +IEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQE +RFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD +>match$6_423_443 +EAAIEAQAAGVEQRLKDLVNQ +>match$7_2_233 +QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD +SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK +IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL +VQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYH +>match$7_353_416 +PTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT +ERAA +>match$8_1_584 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGE +>match$9_444_590 +DGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDL +LYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTR +LEYSDVKITTLPPAKRVYGGEADAADK +>match$10_1_584 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGE +>match$11_1_575 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLP +>match$12_3_582 +TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS +FEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKI +ERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLV +QIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI +LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKG +NTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGI +ETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGN +EAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAE +LQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTE +RDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYG +>match$13_453_581 +RDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHG +LNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKIT +TLPPAKRVY +>match$14_473_493 +MQKTIDKLAELQERFKRVRIT +>match$15_43_52 +RSHTVAAEGG +>match$16_543_577 +RDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPA +>match$17_227_358 +MEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELG +PRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVK +EPIPVRPTAHYT +>match$18_7_397 +DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYH +FHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTW +FAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRA +NAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE +GCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS +TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ +NCETRIKGLFAVGECSSVGLHGANRLGSNSL +>match$19_8_27 +LAIVGAGGAGLRAAIAAAQA +>match$19_360_382 +GGIETDQNCETRIKGLFAVGECS +>match$20_4_173 +QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVES +LETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI +GTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYI +>match$21_5_467 +QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL +ETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG +TGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKM +VHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDE +DGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLS +GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGC +IIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAA +VAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL +>match$22_1_180 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +>match$23_3_174 +KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE +SLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF +IGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG +>match$24_1_468 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD +>match$25_253_265 +ILDEAANKGTGKW +>match$26_181_433 +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRA +>match$27_436_467 +LPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL +>match$28_4_27 +QQIGVVGMAVMGRNLALNIESRGY +>match$28_66_95 +TPRRILLMVKAGAGTDAAIDSLKPYLDKGD +>match$28_119_144 +GFNFIGTGVSGGEEGALKGPSIMPGG +>match$28_168_196 +PCVTYIGADGAGHYVKMVHNGIEYGDMQL +>match$28_249_276 +LVDVILDEAANKGTGKWTSQSALDLGEP +>match$28_356_378 +IAKIFRAGCIIRAQFLQKITDAY +>match$29_1_466 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW +>match$30_1_466 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW +>match$31_179_466 +GHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDI +FTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVA +ASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAK +IFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPV +PTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW +>match$32_177_467 +GAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK +DIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQR +VAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI +AKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI +PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL +>match$33_114_128 +TFKNALTTLPMGGGK +>match$33_193_215 +VFTGKGLSFGGSLIRPEATGYGL +>match$33_235_255 +VSVSGSGNVAQYAIEKAMEFG +>match$33_372_383 +ANAGGVATSGLE +>match$34_6_196 +SLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRV +VWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMG +GGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKK +LSNNTACVFTG +>match$35_68_188 +VDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGG +KGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLS +N +>match$36_202_445 +GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA +SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC +ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG +LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM +LAQG +>match$37_22_447 +TEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWR +VQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEG +EVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSF +GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA +SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC +ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG +LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM +LAQGVI +>match$38_204_445 +SLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD +SSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCAT +QNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLE +MAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLA +QG +>match$39_209_372 +EATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTV +VDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELD +VDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAA +>match$40_202_446 +GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA +SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC +ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG +LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM +LAQGV +>match$41_7_67 +LESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVV +W +>match$41_373_446 +NAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIA +GFVKVADAMLAQGV +>match$42_122_135 +LPMGGGKGGSDFDP +>match$43_57_184 +PERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFK +NALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREV +GFMAGMMK +>match$44_1_447 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI +>match$45_1_447 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI +>match$46_2_37 +RQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWD
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-d/__base__.tsv Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,59 @@ +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF51905 361 415 2.27E-71 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF51905 2 250 2.27E-71 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 4.7E-250 T 24-01-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.90.700.10 234 352 3.6E-37 T 24-01-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.5E-5 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.5E-5 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:1.20.58.100 426 537 1.5E-38 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Coils Coil 423 443 - T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.50.50.60 353 416 5.9E-106 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.50.50.60 2 233 5.9E-106 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PANTHER PTHR11632 1 584 0.0 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF46977 444 590 3.01E-46 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PANTHER PTHR11632:SF50 1 584 0.0 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PIRSF PIRSF000171 1 575 2.0E-42 T 24-01-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 24-01-2016 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 7.0E-39 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Coils Coil 473 493 - T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 24-01-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:4.10.80.40 543 577 5.5E-18 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF56425 227 358 6.88E-43 T 24-01-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Pfam PF00890 FAD binding domain 7 397 1.1E-115 T 24-01-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.0E-10 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 3.0E-10 T 24-01-2016 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 SUPERFAMILY SSF51735 4 173 4.86E-50 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00350 1776f92beb74ff0ccd9ac47a65663644 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 467 1.1E-232 T 24-01-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:3.40.50.720 1 180 1.9E-61 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 174 1.8E-52 T 24-01-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PIRSF PIRSF000109 1 468 1.9E-243 T 24-01-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 24-01-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:1.10.1040.10 181 433 1.0E-119 T 24-01-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:1.20.5.320 436 467 1.4E-22 T 24-01-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PANTHER PTHR11811:SF25 1 466 7.6E-305 T 24-01-2016 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PANTHER PTHR11811 1 466 7.6E-305 T 24-01-2016 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 466 2.0E-132 T 24-01-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 SUPERFAMILY SSF48179 177 467 6.8E-132 T 24-01-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SUPERFAMILY SSF53223 6 196 6.72E-74 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:3.40.192.10 68 188 1.0E-60 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 1.3E-87 T 24-01-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PIRSF PIRSF000185 22 447 1.8E-114 T 24-01-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SMART SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 204 445 2.0E-93 T 24-01-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:3.40.50.720 209 372 1.6E-63 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SUPERFAMILY SSF51735 202 446 4.96E-77 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:1.10.285.10 7 67 8.2E-28 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:1.10.285.10 373 446 2.0E-26 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 6.3E-49 T 24-01-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PANTHER PTHR11606 1 447 3.2E-250 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PANTHER PTHR11606:SF4 1 447 3.2E-250 T 24-01-2016 +C1P5Z7 abfa044baa298f169ea62ac6b48e1185 43 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 2 37 1.0E-11 T 24-01-2016 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-d/__base__.xml Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,2204 @@ +<?xml version="1.0" encoding="UTF-8" standalone="yes"?> +<protein-matches xmlns="http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5"> + <protein> + <sequence md5="0d2c0f1acdd08ab0157f2308531a58e4">MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG</sequence> + <xref desc="FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3" + db="sp" id="P00363" name="Fumarate reductase flavoprotein subunit"/> + <matches> + <coils-match> + <signature ac="Coil" name="Coil"> + <signature-library-release library="COILS" version="2.2.1"/> + </signature> + <locations> + <coils-location start="423" end="443"/> + </locations> + </coils-match> + <coils-match> + <signature ac="Coil" name="Coil"> + <signature-library-release library="COILS" version="2.2.1"/> + </signature> + <locations> + <coils-location start="473" end="493"/> + </locations> + </coils-match> + <fingerprints-match evalue="2.5E-5" graphscan="I....I..."> + <signature ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" + name="PNDRDTASEI"> + <models> + <model ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" + name="PNDRDTASEI"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="6" pvalue="0.0222" score="30.15" start="375" end="382"/> + <fingerprints-location motifNumber="1" pvalue="4.15E-10" score="41.52" start="7" end="29"/> + </locations> + </fingerprints-match> + <fingerprints-match evalue="3.0E-10" graphscan="I...I"> + <signature ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"> + <models> + <model ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="1" pvalue="4.72E-9" score="47.18" start="8" end="27"/> + <fingerprints-location motifNumber="5" pvalue="3.2E-8" score="30.52" start="360" end="382"/> + </locations> + </fingerprints-match> + <hmmer3-match evalue="4.2E-250" score="829.0"> + <signature ac="TIGR01812" + desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" + name="TIGR01812"> + <entry ac="IPR014006" desc="Succinate dehydrogenase/fumarate reductase, flavoprotein subunit" + name="Succ_Dhase_FrdA_Gneg" type="FAMILY"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016627" + name="oxidoreductase activity, acting on the CH-CH group of donors"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0022900" name="electron transport chain"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0050660" + name="flavin adenine dinucleotide binding"/> + <pathway-xref db="KEGG" id="00020+1.3.5.1" name="Citrate cycle (TCA cycle)"/> + <pathway-xref db="KEGG" id="00650+1.3.5.1" name="Butanoate metabolism"/> + <pathway-xref db="KEGG" id="00190+1.3.5.1" name="Oxidative phosphorylation"/> + <pathway-xref db="MetaCyc" id="PWY-561" + name="Superpathway of glyoxylate cycle and fatty acid degradation"/> + <pathway-xref db="KEGG" id="00720+1.3.5.1" name="Carbon fixation pathways in prokaryotes"/> + <pathway-xref db="MetaCyc" id="PWY-5690" name="TCA cycle II (plants and fungi)"/> + <pathway-xref db="MetaCyc" id="PWY-7254" name="TCA cycle VII (acetate-producers)"/> + <pathway-xref db="MetaCyc" id="PWY-6969" + name="TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"/> + <pathway-xref db="MetaCyc" id="PWY-6728" name="Methylaspartate cycle"/> + <pathway-xref db="MetaCyc" id="PWY-4302" + name="Aerobic respiration III (alternative oxidase pathway)"/> + <pathway-xref db="MetaCyc" id="PWY-7279" name="Aerobic respiration II (cytochrome c) (yeast)"/> + <pathway-xref db="MetaCyc" id="PWY-3781" name="Aerobic respiration I (cytochrome c)"/> + </entry> + <models> + <model ac="TIGR01812" + desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" + name="TIGR01812"/> + </models> + <signature-library-release library="TIGRFAM" version="15.0"/> + </signature> + <locations> + <hmmer3-location env-end="581" env-start="7" score="828.8" evalue="4.7E-250" hmm-start="1" + hmm-end="568" hmm-length="0" start="7" end="581"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.6E-37" score="127.8"> + <signature ac="G3DSA:3.90.700.10"> + <entry ac="IPR027477" + desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" + name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> + <models> + <model ac="1y0pA03"/> + <model ac="1jnrA02"/> + <model ac="1chuA02"/> + <model ac="2bs2A02"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="352" env-start="230" score="126.6" evalue="3.6E-37" hmm-start="1" + hmm-end="107" hmm-length="0" start="234" end="352"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="9.1E-39" score="131.9"> + <signature ac="G3DSA:1.20.58.100"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="2bs2A03"/> + <model ac="1kf6A03"/> + <model ac="1knrA03"/> + <model ac="2h88A03"/> + <model ac="2wdqA03"/> + <model ac="1jnrA03"/> + <model ac="1chuA03"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="541" env-start="423" score="131.2" evalue="1.5E-38" hmm-start="4" + hmm-end="115" hmm-length="0" start="426" end="537"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="4.0E-106" score="354.2"> + <signature ac="G3DSA:3.50.50.60"> + <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="1chuA01"/> + <model ac="1fl2A01"/> + <model ac="1d5tA01"/> + <model ac="1xdiA02"/> + <model ac="1fecA02"/> + <model ac="1w4xA01"/> + <model ac="3c4nA01"/> + <model ac="1jnrA01"/> + <model ac="1xdiA01"/> + <model ac="1sezA01"/> + <model ac="2h88A01"/> + <model ac="1ju2A01"/> + <model ac="1trbA01"/> + <model ac="3qvpA01"/> + <model ac="2gv8A02"/> + <model ac="1fcdA02"/> + <model ac="1rsgB01"/> + <model ac="2yquA02"/> + <model ac="1b37A01"/> + <model ac="1kdgA01"/> + <model ac="2gf3A01"/> + <model ac="1mo9A01"/> + <model ac="1rsgA01"/> + <model ac="2gqwA01"/> + <model ac="1nhpA01"/> + <model ac="2pyxA01"/> + <model ac="3f8dA02"/> + <model ac="2r9zA02"/> + <model ac="2gqfA01"/> + <model ac="1vg0A01"/> + <model ac="1pj5A01"/> + <model ac="2i0zA01"/> + <model ac="1o94A03"/> + <model ac="1rp0A02"/> + <model ac="3gyjA01"/> + <model ac="2eq6A02"/> + <model ac="3dghA02"/> + <model ac="1fcdA01"/> + <model ac="1y0pA02"/> + <model ac="1pn0A01"/> + <model ac="1k0iA01"/> + <model ac="2zbwA01"/> + <model ac="1gteA03"/> + <model ac="1nhpA02"/> + <model ac="1xhcA01"/> + <model ac="2iidA02"/> + <model ac="1lqtA02"/> + <model ac="3c4aA01"/> + <model ac="3cgvA01"/> + <model ac="3dghA01"/> + <model ac="1mo9A02"/> + <model ac="1fl2A02"/> + <model ac="1onfA02"/> + <model ac="3dk9A01"/> + <model ac="2zbwA02"/> + <model ac="1m6iA01"/> + <model ac="2eq6A01"/> + <model ac="1ps9A03"/> + <model ac="1gteA04"/> + <model ac="2qaeA02"/> + <model ac="3fg2P02"/> + <model ac="2gqwA02"/> + <model ac="3dk9A02"/> + <model ac="3fbsB01"/> + <model ac="2gv8A01"/> + <model ac="3o0hA01"/> + <model ac="1s3eA01"/> + <model ac="1ryiA01"/> + <model ac="1m6iA02"/> + <model ac="3kkjA01"/> + <model ac="3fbsA02"/> + <model ac="1q1rA01"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" + hmm-end="329" hmm-length="0" start="353" end="416"/> + <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" + hmm-end="329" hmm-length="0" start="2" end="233"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="8.5E-43" score="144.0"> + <signature ac="PIRSF000171" name="SDHA_APRA_LASPO"> + <entry ac="IPR030664" + desc="Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit" + name="SdhA/FrdA/AprA" type="FAMILY"/> + <models> + <model ac="PIRSF000171" name="SDHA_APRA_LASPO"/> + </models> + <signature-library-release library="PIRSF" version="3.01"/> + </signature> + <locations> + <hmmer3-location env-end="575" env-start="1" score="142.8" evalue="2.0E-42" hmm-start="3" + hmm-end="565" hmm-length="0" start="1" end="575"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="0.0" score="1214.6"> + <signature ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" + name="TIGR01176"> + <entry ac="IPR005884" desc="Fumarate reductase, flavoprotein subunit" name="Fum_red_fp" + type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0009061" name="anaerobic respiration"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <pathway-xref db="KEGG" id="00650+1.3.5.4" name="Butanoate metabolism"/> + <pathway-xref db="KEGG" id="00720+1.3.5.4" name="Carbon fixation pathways in prokaryotes"/> + <pathway-xref db="KEGG" id="00620+1.3.5.4" name="Pyruvate metabolism"/> + <pathway-xref db="MetaCyc" id="PWY-5913" name="Partial TCA cycle (obligate autotrophs)"/> + <pathway-xref db="KEGG" id="00020+1.3.5.4" name="Citrate cycle (TCA cycle)"/> + <pathway-xref db="MetaCyc" id="PWY-7384" + name="Anaerobic energy metabolism (invertebrates, mitochondrial)"/> + <pathway-xref db="MetaCyc" id="PWY-5392" name="Reductive TCA cycle II"/> + </entry> + <models> + <model ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" + name="TIGR01176"/> + </models> + <signature-library-release library="TIGRFAM" version="15.0"/> + </signature> + <locations> + <hmmer3-location env-end="582" env-start="3" score="1214.4" evalue="0.0" hmm-start="1" hmm-end="580" + hmm-length="0" start="3" end="582"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="4.2E-39" score="133.1"> + <signature ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="581" env-start="453" score="132.4" evalue="7.0E-39" hmm-start="1" + hmm-end="128" hmm-length="0" start="453" end="581"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="2.3E-18" score="65.2"> + <signature ac="G3DSA:4.10.80.40"> + <models> + <model ac="1kf6A04"/> + <model ac="2h88A04"/> + <model ac="2wdqA04"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="577" env-start="543" score="64.1" evalue="5.5E-18" hmm-start="1" + hmm-end="35" hmm-length="0" start="543" end="577"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.1E-115" score="386.8"> + <signature ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"> + <entry ac="IPR003953" desc="FAD-dependent oxidoreductase 2, FAD binding domain" name="FAD-binding_2" + type="DOMAIN"/> + <models> + <model ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="397" env-start="7" score="386.8" evalue="1.1E-115" hmm-start="1" + hmm-end="417" hmm-length="0" start="7" end="397"/> + </locations> + </hmmer3-match> + <panther-match evalue="0.0" familyName="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT" score="1520.5"> + <signature ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"> + <models> + <model ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"/> + </models> + <signature-library-release library="PANTHER" version="10.0"/> + </signature> + <locations> + <panther-location start="1" end="584"/> + </locations> + </panther-match> + <panther-match evalue="0.0" familyName="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT" score="1520.5"> + <signature ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"> + <models> + <model ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"/> + </models> + <signature-library-release library="PANTHER" version="10.0"/> + </signature> + <locations> + <panther-location start="1" end="584"/> + </locations> + </panther-match> + <patternscan-match> + <signature ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." + name="FRD_SDH_FAD_BINDING"> + <entry ac="IPR003952" desc="Fumarate reductase/succinate dehydrogenase, FAD-binding site" + name="FRD_SDH_FAD_BS" type="BINDING_SITE"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." + name="FRD_SDH_FAD_BINDING"/> + </models> + <signature-library-release library="PROSITE_PATTERNS" version="20.113"/> + </signature> + <locations> + <patternscan-location level="STRONG" start="43" end="52"> + <alignment>RSHTvaAeGG</alignment> + </patternscan-location> + </locations> + </patternscan-match> + <superfamilyhmmer3-match evalue="2.27E-71"> + <signature ac="SSF51905" name="FAD/NAD(P)-binding domain"> + <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="0048494" name="FAD/NAD(P)-binding domain"/> + <model ac="0052964" name="FAD/NAD(P)-binding domain"/> + <model ac="0038468" name="FAD/NAD(P)-binding domain"/> + <model ac="0050363" name="FAD/NAD(P)-binding domain"/> + <model ac="0052600" name="FAD/NAD(P)-binding domain"/> + <model ac="0048009" name="FAD/NAD(P)-binding domain"/> + <model ac="0045798" name="FAD/NAD(P)-binding domain"/> + <model ac="0053857" name="FAD/NAD(P)-binding domain"/> + <model ac="0052313" name="FAD/NAD(P)-binding domain"/> + <model ac="0047270" name="FAD/NAD(P)-binding domain"/> + <model ac="0045519" name="FAD/NAD(P)-binding domain"/> + <model ac="0048583" name="FAD/NAD(P)-binding domain"/> + <model ac="0044705" name="FAD/NAD(P)-binding domain"/> + <model ac="0050364" name="FAD/NAD(P)-binding domain"/> + <model ac="0050960" name="FAD/NAD(P)-binding domain"/> + <model ac="0046270" name="FAD/NAD(P)-binding domain"/> + <model ac="0047022" name="FAD/NAD(P)-binding domain"/> + <model ac="0036889" name="FAD/NAD(P)-binding domain"/> + <model ac="0047564" name="FAD/NAD(P)-binding domain"/> + <model ac="0040688" name="FAD/NAD(P)-binding domain"/> + <model ac="0046274" name="FAD/NAD(P)-binding domain"/> + <model ac="0036016" name="FAD/NAD(P)-binding domain"/> + <model ac="0046416" name="FAD/NAD(P)-binding domain"/> + <model ac="0037643" name="FAD/NAD(P)-binding domain"/> + <model ac="0054879" name="FAD/NAD(P)-binding domain"/> + <model ac="0044413" name="FAD/NAD(P)-binding domain"/> + <model ac="0038285" name="FAD/NAD(P)-binding domain"/> + <model ac="0040660" name="FAD/NAD(P)-binding domain"/> + <model ac="0040619" name="FAD/NAD(P)-binding domain"/> + <model ac="0046128" name="FAD/NAD(P)-binding domain"/> + <model ac="0046972" name="FAD/NAD(P)-binding domain"/> + <model ac="0046973" name="FAD/NAD(P)-binding domain"/> + <model ac="0047682" name="FAD/NAD(P)-binding domain"/> + <model ac="0040602" name="FAD/NAD(P)-binding domain"/> + <model ac="0047271" name="FAD/NAD(P)-binding domain"/> + <model ac="0040049" name="FAD/NAD(P)-binding domain"/> + <model ac="0052032" name="FAD/NAD(P)-binding domain"/> + <model ac="0052911" name="FAD/NAD(P)-binding domain"/> + <model ac="0036301" name="FAD/NAD(P)-binding 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name="FAD/NAD(P)-binding domain"/> + <model ac="0054159" name="FAD/NAD(P)-binding domain"/> + <model ac="0046750" name="FAD/NAD(P)-binding domain"/> + <model ac="0038449" name="FAD/NAD(P)-binding domain"/> + <model ac="0046761" name="FAD/NAD(P)-binding domain"/> + <model ac="0046760" name="FAD/NAD(P)-binding domain"/> + <model ac="0036092" name="FAD/NAD(P)-binding domain"/> + <model ac="0047133" name="FAD/NAD(P)-binding domain"/> + <model ac="0039664" name="FAD/NAD(P)-binding domain"/> + <model ac="0041341" name="FAD/NAD(P)-binding domain"/> + <model ac="0041940" name="FAD/NAD(P)-binding domain"/> + <model ac="0048199" name="FAD/NAD(P)-binding domain"/> + <model ac="0046751" name="FAD/NAD(P)-binding domain"/> + <model ac="0050961" name="FAD/NAD(P)-binding domain"/> + <model ac="0045881" name="FAD/NAD(P)-binding domain"/> + <model ac="0043577" name="FAD/NAD(P)-binding domain"/> + <model ac="0047068" name="FAD/NAD(P)-binding domain"/> + <model ac="0053322" name="FAD/NAD(P)-binding 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name="FAD/NAD(P)-binding domain"/> + <model ac="0045870" name="FAD/NAD(P)-binding domain"/> + <model ac="0049930" name="FAD/NAD(P)-binding domain"/> + <model ac="0045797" name="FAD/NAD(P)-binding domain"/> + <model ac="0054078" name="FAD/NAD(P)-binding domain"/> + <model ac="0040035" name="FAD/NAD(P)-binding domain"/> + <model ac="0053967" name="FAD/NAD(P)-binding domain"/> + <model ac="0049679" name="FAD/NAD(P)-binding domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="361" end="415"/> + <superfamilyhmmer3-location start="2" end="250"/> + </locations> + </superfamilyhmmer3-match> + <superfamilyhmmer3-match evalue="3.01E-46"> + <signature ac="SSF46977" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="0035988" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0048345" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0052031" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0040048" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0039663" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="444" end="590"/> + </locations> + </superfamilyhmmer3-match> + <superfamilyhmmer3-match evalue="6.88E-43"> + <signature ac="SSF56425" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"> + <entry ac="IPR027477" + desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" + name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> + <models> + <model ac="0039665" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0052033" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0036733" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0036265" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0040050" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0035990" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0041342" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0042899" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="227" end="358"/> + </locations> + </superfamilyhmmer3-match> + </matches> + </protein> + <protein> + <sequence md5="abfa044baa298f169ea62ac6b48e1185">MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES</sequence> + <xref desc="SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1" + db="sp" id="C1P5Z7" name="Putative inhibitor of glucose uptake transporter SgrT"/> + <matches> + <hmmer3-match evalue="8.8E-12" score="44.3"> + <signature ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"> + <entry ac="IPR031767" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT" type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0046325" + name="negative regulation of glucose import"/> + </entry> + <models> + <model ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="41" env-start="1" score="44.0" evalue="1.0E-11" hmm-start="2" hmm-end="39" + hmm-length="0" start="2" end="37"/> + </locations> + </hmmer3-match> + </matches> + </protein> + <protein> + <sequence md5="9ec8e26fcf5c160f533bf9a69dec0212">MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI</sequence> + <xref desc="DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1" + db="sp" id="P00370" name="NADP-specific glutamate dehydrogenase"/> + <matches> + <fingerprints-match evalue="2.5E-33" graphscan="IIII"> + <signature ac="PR00082" desc="Glutamate/leucine/phenylalanine/valine dehydrogenase signature" + name="GLFDHDRGNASE"> + <entry ac="IPR006095" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase" + name="Glu/Leu/Phe/Val_DH" type="FAMILY"> + 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domain-like"/> + <model ac="0049729" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0051872" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0054551" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0041099" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0052328" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0042306" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0048756" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0045524" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0054910" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0052564" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0040515" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0054098" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0053659" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0051796" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0050268" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0044958" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0037218" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0038855" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0037318" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="177" end="467"/> + </locations> + </superfamilyhmmer3-match> + </matches> + </protein> +</protein-matches>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-d/input.fasta Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,32 @@ +>sp|C1P5Z7|SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1 +MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES +>sp|P00350|6PGD_ECOLI 6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD +>sp|P00363|FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA +NG +>sp|P00370|DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-p/__base__.gff3 Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,377 @@ +##gff-version 3 +##feature-ontology http://song.cvs.sourceforge.net/viewvc/song/ontology/sofa.obo?revision=1.269 +##sequence-region P00363 1 602 +P00363 . polypeptide 1 602 . + . md5=0d2c0f1acdd08ab0157f2308531a58e4;ID=P00363 +P00363 SUPERFAMILY protein_match 361 415 2.27E-71 + . Name=SSF51905;Target=P00363 361 415;status=T;ID=match$1_361_415;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 SUPERFAMILY protein_match 2 250 2.27E-71 + . Name=SSF51905;Target=P00363 2 250;status=T;ID=match$1_2_250;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 TIGRFAM protein_match 7 581 4.7E-250 + . Name=TIGR01812;signature_desc=sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit;Target=P00363 7 581;status=T;ID=match$2_7_581;Ontology_term="GO:0016627","GO:0022900","GO:0050660","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR014006" +P00363 Gene3D protein_match 234 352 3.6E-37 + . Name=G3DSA:3.90.700.10;Target=P00363 234 352;status=T;ID=match$3_234_352;date=24-01-2016;Dbxref="InterPro:IPR027477" +P00363 PRINTS protein_match 375 382 2.5E-5 + . Name=PR00411;signature_desc=Pyridine nucleotide disulphide reductase class-I signature;Target=P00363 375 382;status=T;ID=match$4_375_382;date=24-01-2016 +P00363 PRINTS protein_match 7 29 2.5E-5 + . Name=PR00411;signature_desc=Pyridine nucleotide disulphide reductase class-I signature;Target=P00363 7 29;status=T;ID=match$4_7_29;date=24-01-2016 +P00363 Gene3D protein_match 426 537 1.5E-38 + . Name=G3DSA:1.20.58.100;Target=P00363 426 537;status=T;ID=match$5_426_537;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" +P00363 Coils protein_match 423 443 . + . Name=Coil;Target=P00363 423 443;status=T;ID=match$6_423_443;date=24-01-2016 +P00363 Gene3D protein_match 353 416 5.9E-106 + . Name=G3DSA:3.50.50.60;Target=P00363 353 416;status=T;ID=match$7_353_416;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 Gene3D protein_match 2 233 5.9E-106 + . Name=G3DSA:3.50.50.60;Target=P00363 2 233;status=T;ID=match$7_2_233;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" +P00363 PANTHER protein_match 1 584 0.0 + . Name=PTHR11632;Target=P00363 1 584;status=T;ID=match$8_1_584;date=24-01-2016 +P00363 SUPERFAMILY protein_match 444 590 3.01E-46 + . Name=SSF46977;Target=P00363 444 590;status=T;ID=match$9_444_590;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" +P00363 PANTHER protein_match 1 584 0.0 + . Name=PTHR11632:SF50;Target=P00363 1 584;status=T;ID=match$10_1_584;date=24-01-2016 +P00363 PIRSF protein_match 1 575 2.0E-42 + . Name=PIRSF000171;Target=P00363 1 575;status=T;ID=match$11_1_575;date=24-01-2016;Dbxref="InterPro:IPR030664" +P00363 TIGRFAM protein_match 3 582 0.0 + . Name=TIGR01176;signature_desc=fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit;Target=P00363 3 582;status=T;ID=match$12_3_582;Ontology_term="GO:0009061","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR005884" +P00363 Pfam protein_match 453 581 7.0E-39 + . Name=PF02910;signature_desc=Fumarate reductase flavoprotein C-term;Target=P00363 453 581;status=T;ID=match$13_453_581;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" +P00363 Coils protein_match 473 493 . + . Name=Coil;Target=P00363 473 493;status=T;ID=match$14_473_493;date=24-01-2016 +P00363 ProSitePatterns protein_match 43 52 . + . Name=PS00504;signature_desc=Fumarate reductase / succinate dehydrogenase FAD-binding site.;Target=P00363 43 52;status=T;ID=match$15_43_52;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR003952" +P00363 Gene3D protein_match 543 577 5.5E-18 + . Name=G3DSA:4.10.80.40;Target=P00363 543 577;status=T;ID=match$16_543_577;date=24-01-2016 +P00363 SUPERFAMILY protein_match 227 358 6.88E-43 + . Name=SSF56425;Target=P00363 227 358;status=T;ID=match$17_227_358;date=24-01-2016;Dbxref="InterPro:IPR027477" +P00363 Pfam protein_match 7 397 1.1E-115 + . Name=PF00890;signature_desc=FAD binding domain;Target=P00363 7 397;status=T;ID=match$18_7_397;date=24-01-2016;Dbxref="InterPro:IPR003953" +P00363 PRINTS protein_match 8 27 3.0E-10 + . Name=PR00368;signature_desc=FAD-dependent pyridine nucleotide reductase signature;Target=P00363 8 27;status=T;ID=match$19_8_27;date=24-01-2016 +P00363 PRINTS protein_match 360 382 3.0E-10 + . Name=PR00368;signature_desc=FAD-dependent pyridine nucleotide reductase signature;Target=P00363 360 382;status=T;ID=match$19_360_382;date=24-01-2016 +##sequence-region P00350 1 468 +P00350 . polypeptide 1 468 . + . md5=1776f92beb74ff0ccd9ac47a65663644;ID=P00350 +P00350 SUPERFAMILY protein_match 4 173 4.86E-50 + . Name=SSF51735;Target=P00350 4 173;status=T;ID=match$20_4_173;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00350 TIGRFAM protein_match 5 467 1.1E-232 + . Name=TIGR00873;signature_desc=gnd: 6-phosphogluconate dehydrogenase (decarboxylating);Target=P00350 5 467;status=T;ID=match$21_5_467;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006113" +P00350 Gene3D protein_match 1 180 1.9E-61 + . Name=G3DSA:3.40.50.720;Target=P00350 1 180;status=T;ID=match$22_1_180;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00350 Pfam protein_match 3 174 1.8E-52 + . Name=PF03446;signature_desc=NAD binding domain of 6-phosphogluconate dehydrogenase;Target=P00350 3 174;status=T;ID=match$23_3_174;Ontology_term="GO:0004616","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006115" +P00350 PIRSF protein_match 1 468 1.9E-243 + . Name=PIRSF000109;Target=P00350 1 468;status=T;ID=match$24_1_468;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006113" +P00350 ProSitePatterns protein_match 253 265 . + . Name=PS00461;signature_desc=6-phosphogluconate dehydrogenase signature.;Target=P00350 253 265;status=T;ID=match$25_253_265;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006184" +P00350 Gene3D protein_match 181 433 1.0E-119 + . Name=G3DSA:1.10.1040.10;Target=P00350 181 433;status=T;ID=match$26_181_433;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR013328" +P00350 Gene3D protein_match 436 467 1.4E-22 + . Name=G3DSA:1.20.5.320;Target=P00350 436 467;status=T;ID=match$27_436_467;date=24-01-2016;Dbxref="InterPro:IPR012284" +P00350 PRINTS protein_match 249 276 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 249 276;status=T;ID=match$28_249_276;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 168 196 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 168 196;status=T;ID=match$28_168_196;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 66 95 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 66 95;status=T;ID=match$28_66_95;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 119 144 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 119 144;status=T;ID=match$28_119_144;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 4 27 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 4 27;status=T;ID=match$28_4_27;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PRINTS protein_match 356 378 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 356 378;status=T;ID=match$28_356_378;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" +P00350 PANTHER protein_match 1 466 7.6E-305 + . Name=PTHR11811:SF25;Target=P00350 1 466;status=T;ID=match$29_1_466;date=24-01-2016 +P00350 PANTHER protein_match 1 466 7.6E-305 + . Name=PTHR11811;Target=P00350 1 466;status=T;ID=match$30_1_466;date=24-01-2016 +P00350 Pfam protein_match 179 466 2.0E-132 + . Name=PF00393;signature_desc=6-phosphogluconate dehydrogenase, C-terminal domain;Target=P00350 179 466;status=T;ID=match$31_179_466;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006114" +P00350 SUPERFAMILY protein_match 177 467 6.8E-132 + . Name=SSF48179;Target=P00350 177 467;status=T;ID=match$32_177_467;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR008927" +##sequence-region P00370 1 447 +P00370 . polypeptide 1 447 . + . md5=9ec8e26fcf5c160f533bf9a69dec0212;ID=P00370 +P00370 PRINTS protein_match 372 383 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 372 383;status=T;ID=match$33_372_383;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 PRINTS protein_match 114 128 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 114 128;status=T;ID=match$33_114_128;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 PRINTS protein_match 235 255 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 235 255;status=T;ID=match$33_235_255;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 PRINTS protein_match 193 215 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 193 215;status=T;ID=match$33_193_215;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 SUPERFAMILY protein_match 6 196 6.72E-74 + . Name=SSF53223;Target=P00370 6 196;status=T;ID=match$34_6_196;date=24-01-2016 +P00370 Gene3D protein_match 68 188 1.0E-60 + . Name=G3DSA:3.40.192.10;Target=P00370 68 188;status=T;ID=match$35_68_188;date=24-01-2016 +P00370 Pfam protein_match 202 445 1.3E-87 + . Name=PF00208;signature_desc=Glutamate/Leucine/Phenylalanine/Valine dehydrogenase;Target=P00370 202 445;status=T;ID=match$36_202_445;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006096" +P00370 PIRSF protein_match 22 447 1.8E-114 + . Name=PIRSF000185;Target=P00370 22 447;status=T;ID=match$37_22_447;Ontology_term="GO:0016639","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR014362" +P00370 SMART protein_match 204 445 2.0E-93 + . Name=SM00839;signature_desc=Glutamate/Leucine/Phenylalanine/Valine dehydrogenase;Target=P00370 204 445;status=T;ID=match$38_204_445;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006096" +P00370 Gene3D protein_match 209 372 1.6E-63 + . Name=G3DSA:3.40.50.720;Target=P00370 209 372;status=T;ID=match$39_209_372;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00370 SUPERFAMILY protein_match 202 446 4.96E-77 + . Name=SSF51735;Target=P00370 202 446;status=T;ID=match$40_202_446;date=24-01-2016;Dbxref="InterPro:IPR016040" +P00370 Gene3D protein_match 7 67 8.2E-28 + . Name=G3DSA:1.10.285.10;Target=P00370 7 67;status=T;ID=match$41_7_67;date=24-01-2016 +P00370 Gene3D protein_match 373 446 2.0E-26 + . Name=G3DSA:1.10.285.10;Target=P00370 373 446;status=T;ID=match$41_373_446;date=24-01-2016 +P00370 ProSitePatterns protein_match 122 135 . + . Name=PS00074;signature_desc=Glu / Leu / Phe / Val dehydrogenases active site.;Target=P00370 122 135;status=T;ID=match$42_122_135;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" +P00370 Pfam protein_match 57 184 6.3E-49 + . Name=PF02812;signature_desc=Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;Target=P00370 57 184;status=T;ID=match$43_57_184;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006097" +P00370 PANTHER protein_match 1 447 3.2E-250 + . Name=PTHR11606;Target=P00370 1 447;status=T;ID=match$44_1_447;date=24-01-2016 +P00370 PANTHER protein_match 1 447 3.2E-250 + . Name=PTHR11606:SF4;Target=P00370 1 447;status=T;ID=match$45_1_447;date=24-01-2016 +##sequence-region C1P5Z7 1 43 +C1P5Z7 . polypeptide 1 43 . + . md5=abfa044baa298f169ea62ac6b48e1185;ID=C1P5Z7 +C1P5Z7 Pfam protein_match 2 37 1.0E-11 + . Name=PF15894;signature_desc=Inhibitor of glucose uptake transporter SgrT;Target=C1P5Z7 2 37;status=T;ID=match$46_2_37;Ontology_term="GO:0046325";date=24-01-2016;Dbxref="InterPro:IPR031767" +##FASTA +>C1P5Z7 +MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES +>P00350 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD +>P00363 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA +NG +>P00370 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI +>match$1_2_250 +QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD +SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK +IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL +VQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSG +ILMTEGCRG +>match$1_361_415 +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERA +>match$2_7_581 +DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYH +FHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTW +FAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRA +NAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE +GCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS +TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ +NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAI +EAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQER +FKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDV +NFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVY +>match$3_234_352 +PTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQ +AFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVR +>match$4_7_29 +DLAIVGAGGAGLRAAIAAAQANP +>match$4_375_382 +LFAVGECS +>match$5_426_537 +IEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQE +RFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD +>match$6_423_443 +EAAIEAQAAGVEQRLKDLVNQ +>match$7_2_233 +QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD +SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK +IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL +VQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYH +>match$7_353_416 +PTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT +ERAA +>match$8_1_584 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGE +>match$9_444_590 +DGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDL +LYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTR +LEYSDVKITTLPPAKRVYGGEADAADK +>match$10_1_584 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGE +>match$11_1_575 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLP +>match$12_3_582 +TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS +FEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKI +ERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLV +QIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI +LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKG +NTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGI +ETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGN +EAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAE +LQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTE +RDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYG +>match$13_453_581 +RDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHG +LNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKIT +TLPPAKRVY +>match$14_473_493 +MQKTIDKLAELQERFKRVRIT +>match$15_43_52 +RSHTVAAEGG +>match$16_543_577 +RDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPA +>match$17_227_358 +MEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELG +PRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVK +EPIPVRPTAHYT +>match$18_7_397 +DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYH +FHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTW +FAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRA +NAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE +GCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS +TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ +NCETRIKGLFAVGECSSVGLHGANRLGSNSL +>match$19_8_27 +LAIVGAGGAGLRAAIAAAQA +>match$19_360_382 +GGIETDQNCETRIKGLFAVGECS +>match$20_4_173 +QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVES +LETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI +GTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYI +>match$21_5_467 +QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL +ETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG +TGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKM +VHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDE +DGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLS +GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGC +IIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAA +VAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL +>match$22_1_180 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +>match$23_3_174 +KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE +SLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF +IGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG +>match$24_1_468 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD +>match$25_253_265 +ILDEAANKGTGKW +>match$26_181_433 +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRA +>match$27_436_467 +LPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL +>match$28_4_27 +QQIGVVGMAVMGRNLALNIESRGY +>match$28_66_95 +TPRRILLMVKAGAGTDAAIDSLKPYLDKGD +>match$28_119_144 +GFNFIGTGVSGGEEGALKGPSIMPGG +>match$28_168_196 +PCVTYIGADGAGHYVKMVHNGIEYGDMQL +>match$28_249_276 +LVDVILDEAANKGTGKWTSQSALDLGEP +>match$28_356_378 +IAKIFRAGCIIRAQFLQKITDAY +>match$29_1_466 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW +>match$30_1_466 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW +>match$31_179_466 +GHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDI +FTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVA +ASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAK +IFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPV +PTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW +>match$32_177_467 +GAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK +DIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQR +VAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI +AKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI +PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL +>match$33_114_128 +TFKNALTTLPMGGGK +>match$33_193_215 +VFTGKGLSFGGSLIRPEATGYGL +>match$33_235_255 +VSVSGSGNVAQYAIEKAMEFG +>match$33_372_383 +ANAGGVATSGLE +>match$34_6_196 +SLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRV +VWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMG +GGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKK +LSNNTACVFTG +>match$35_68_188 +VDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGG +KGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLS +N +>match$36_202_445 +GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA +SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC +ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG +LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM +LAQG +>match$37_22_447 +TEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWR +VQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEG +EVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSF +GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA +SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC +ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG +LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM +LAQGVI +>match$38_204_445 +SLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD +SSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCAT +QNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLE +MAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLA +QG +>match$39_209_372 +EATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTV +VDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELD +VDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAA +>match$40_202_446 +GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA +SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC +ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG +LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM +LAQGV +>match$41_7_67 +LESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVV +W +>match$41_373_446 +NAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIA +GFVKVADAMLAQGV +>match$42_122_135 +LPMGGGKGGSDFDP +>match$43_57_184 +PERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFK +NALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREV +GFMAGMMK +>match$44_1_447 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI +>match$45_1_447 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI +>match$46_2_37 +RQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWD
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-p/__base__.tsv Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,59 @@ +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF51905 361 415 2.27E-71 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF51905 2 250 2.27E-71 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 4.7E-250 T 24-01-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.90.700.10 234 352 3.6E-37 T 24-01-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.5E-5 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.5E-5 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:1.20.58.100 426 537 1.5E-38 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Coils Coil 423 443 - T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.50.50.60 353 416 5.9E-106 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.50.50.60 2 233 5.9E-106 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PANTHER PTHR11632 1 584 0.0 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF46977 444 590 3.01E-46 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PANTHER PTHR11632:SF50 1 584 0.0 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PIRSF PIRSF000171 1 575 2.0E-42 T 24-01-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 24-01-2016 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 7.0E-39 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Coils Coil 473 493 - T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 24-01-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:4.10.80.40 543 577 5.5E-18 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF56425 227 358 6.88E-43 T 24-01-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Pfam PF00890 FAD binding domain 7 397 1.1E-115 T 24-01-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.0E-10 T 24-01-2016 +P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 3.0E-10 T 24-01-2016 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 SUPERFAMILY SSF51735 4 173 4.86E-50 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00350 1776f92beb74ff0ccd9ac47a65663644 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 467 1.1E-232 T 24-01-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:3.40.50.720 1 180 1.9E-61 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 174 1.8E-52 T 24-01-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PIRSF PIRSF000109 1 468 1.9E-243 T 24-01-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 24-01-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:1.10.1040.10 181 433 1.0E-119 T 24-01-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:1.20.5.320 436 467 1.4E-22 T 24-01-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PANTHER PTHR11811:SF25 1 466 7.6E-305 T 24-01-2016 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 PANTHER PTHR11811 1 466 7.6E-305 T 24-01-2016 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 466 2.0E-132 T 24-01-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 +P00350 1776f92beb74ff0ccd9ac47a65663644 468 SUPERFAMILY SSF48179 177 467 6.8E-132 T 24-01-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SUPERFAMILY SSF53223 6 196 6.72E-74 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:3.40.192.10 68 188 1.0E-60 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 1.3E-87 T 24-01-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PIRSF PIRSF000185 22 447 1.8E-114 T 24-01-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SMART SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 204 445 2.0E-93 T 24-01-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:3.40.50.720 209 372 1.6E-63 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SUPERFAMILY SSF51735 202 446 4.96E-77 T 24-01-2016 IPR016040 NAD(P)-binding domain +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:1.10.285.10 7 67 8.2E-28 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:1.10.285.10 373 446 2.0E-26 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 6.3E-49 T 24-01-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PANTHER PTHR11606 1 447 3.2E-250 T 24-01-2016 +P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PANTHER PTHR11606:SF4 1 447 3.2E-250 T 24-01-2016 +C1P5Z7 abfa044baa298f169ea62ac6b48e1185 43 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 2 37 1.0E-11 T 24-01-2016 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-p/__base__.xml Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,2204 @@ +<?xml version="1.0" encoding="UTF-8" standalone="yes"?> +<protein-matches xmlns="http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5"> + <protein> + <sequence md5="0d2c0f1acdd08ab0157f2308531a58e4">MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG</sequence> + <xref desc="FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3" + db="sp" id="P00363" name="Fumarate reductase flavoprotein subunit"/> + <matches> + <coils-match> + <signature ac="Coil" name="Coil"> + <signature-library-release library="COILS" version="2.2.1"/> + </signature> + <locations> + <coils-location start="423" end="443"/> + </locations> + </coils-match> + <coils-match> + <signature ac="Coil" name="Coil"> + <signature-library-release library="COILS" version="2.2.1"/> + </signature> + <locations> + <coils-location start="473" end="493"/> + </locations> + </coils-match> + <fingerprints-match evalue="2.5E-5" graphscan="I....I..."> + <signature ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" + name="PNDRDTASEI"> + <models> + <model ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" + name="PNDRDTASEI"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="6" pvalue="0.0222" score="30.15" start="375" end="382"/> + <fingerprints-location motifNumber="1" pvalue="4.15E-10" score="41.52" start="7" end="29"/> + </locations> + </fingerprints-match> + <fingerprints-match evalue="3.0E-10" graphscan="I...I"> + <signature ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"> + <models> + <model ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="1" pvalue="4.72E-9" score="47.18" start="8" end="27"/> + <fingerprints-location motifNumber="5" pvalue="3.2E-8" score="30.52" start="360" end="382"/> + </locations> + </fingerprints-match> + <hmmer3-match evalue="4.2E-250" score="829.0"> + <signature ac="TIGR01812" + desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" + name="TIGR01812"> + <entry ac="IPR014006" desc="Succinate dehydrogenase/fumarate reductase, flavoprotein subunit" + name="Succ_Dhase_FrdA_Gneg" type="FAMILY"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016627" + name="oxidoreductase activity, acting on the CH-CH group of donors"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0022900" name="electron transport chain"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0050660" + name="flavin adenine dinucleotide binding"/> + <pathway-xref db="KEGG" id="00020+1.3.5.1" name="Citrate cycle (TCA cycle)"/> + <pathway-xref db="KEGG" id="00650+1.3.5.1" name="Butanoate metabolism"/> + <pathway-xref db="KEGG" id="00190+1.3.5.1" name="Oxidative phosphorylation"/> + <pathway-xref db="MetaCyc" id="PWY-561" + name="Superpathway of glyoxylate cycle and fatty acid degradation"/> + <pathway-xref db="KEGG" id="00720+1.3.5.1" name="Carbon fixation pathways in prokaryotes"/> + <pathway-xref db="MetaCyc" id="PWY-5690" name="TCA cycle II (plants and fungi)"/> + <pathway-xref db="MetaCyc" id="PWY-7254" name="TCA cycle VII (acetate-producers)"/> + <pathway-xref db="MetaCyc" id="PWY-6969" + name="TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"/> + <pathway-xref db="MetaCyc" id="PWY-6728" name="Methylaspartate cycle"/> + <pathway-xref db="MetaCyc" id="PWY-4302" + name="Aerobic respiration III (alternative oxidase pathway)"/> + <pathway-xref db="MetaCyc" id="PWY-7279" name="Aerobic respiration II (cytochrome c) (yeast)"/> + <pathway-xref db="MetaCyc" id="PWY-3781" name="Aerobic respiration I (cytochrome c)"/> + </entry> + <models> + <model ac="TIGR01812" + desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" + name="TIGR01812"/> + </models> + <signature-library-release library="TIGRFAM" version="15.0"/> + </signature> + <locations> + <hmmer3-location env-end="581" env-start="7" score="828.8" evalue="4.7E-250" hmm-start="1" + hmm-end="568" hmm-length="0" start="7" end="581"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.6E-37" score="127.8"> + <signature ac="G3DSA:3.90.700.10"> + <entry ac="IPR027477" + desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" + name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> + <models> + <model ac="1y0pA03"/> + <model ac="1jnrA02"/> + <model ac="1chuA02"/> + <model ac="2bs2A02"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="352" env-start="230" score="126.6" evalue="3.6E-37" hmm-start="1" + hmm-end="107" hmm-length="0" start="234" end="352"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="9.1E-39" score="131.9"> + <signature ac="G3DSA:1.20.58.100"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="2bs2A03"/> + <model ac="1kf6A03"/> + <model ac="1knrA03"/> + <model ac="2h88A03"/> + <model ac="2wdqA03"/> + <model ac="1jnrA03"/> + <model ac="1chuA03"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="541" env-start="423" score="131.2" evalue="1.5E-38" hmm-start="4" + hmm-end="115" hmm-length="0" start="426" end="537"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="4.0E-106" score="354.2"> + <signature ac="G3DSA:3.50.50.60"> + <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="1chuA01"/> + <model ac="1fl2A01"/> + <model ac="1d5tA01"/> + <model ac="1xdiA02"/> + <model ac="1fecA02"/> + <model ac="1w4xA01"/> + <model ac="3c4nA01"/> + <model ac="1jnrA01"/> + <model ac="1xdiA01"/> + <model ac="1sezA01"/> + <model ac="2h88A01"/> + <model ac="1ju2A01"/> + <model ac="1trbA01"/> + <model ac="3qvpA01"/> + <model ac="2gv8A02"/> + <model ac="1fcdA02"/> + <model ac="1rsgB01"/> + <model ac="2yquA02"/> + <model ac="1b37A01"/> + <model ac="1kdgA01"/> + <model ac="2gf3A01"/> + <model ac="1mo9A01"/> + <model ac="1rsgA01"/> + <model ac="2gqwA01"/> + <model ac="1nhpA01"/> + <model ac="2pyxA01"/> + <model ac="3f8dA02"/> + <model ac="2r9zA02"/> + <model ac="2gqfA01"/> + <model ac="1vg0A01"/> + <model ac="1pj5A01"/> + <model ac="2i0zA01"/> + <model ac="1o94A03"/> + <model ac="1rp0A02"/> + <model ac="3gyjA01"/> + <model ac="2eq6A02"/> + <model ac="3dghA02"/> + <model ac="1fcdA01"/> + <model ac="1y0pA02"/> + <model ac="1pn0A01"/> + <model ac="1k0iA01"/> + <model ac="2zbwA01"/> + <model ac="1gteA03"/> + <model ac="1nhpA02"/> + <model ac="1xhcA01"/> + <model ac="2iidA02"/> + <model ac="1lqtA02"/> + <model ac="3c4aA01"/> + <model ac="3cgvA01"/> + <model ac="3dghA01"/> + <model ac="1mo9A02"/> + <model ac="1fl2A02"/> + <model ac="1onfA02"/> + <model ac="3dk9A01"/> + <model ac="2zbwA02"/> + <model ac="1m6iA01"/> + <model ac="2eq6A01"/> + <model ac="1ps9A03"/> + <model ac="1gteA04"/> + <model ac="2qaeA02"/> + <model ac="3fg2P02"/> + <model ac="2gqwA02"/> + <model ac="3dk9A02"/> + <model ac="3fbsB01"/> + <model ac="2gv8A01"/> + <model ac="3o0hA01"/> + <model ac="1s3eA01"/> + <model ac="1ryiA01"/> + <model ac="1m6iA02"/> + <model ac="3kkjA01"/> + <model ac="3fbsA02"/> + <model ac="1q1rA01"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" + hmm-end="329" hmm-length="0" start="353" end="416"/> + <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" + hmm-end="329" hmm-length="0" start="2" end="233"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="8.5E-43" score="144.0"> + <signature ac="PIRSF000171" name="SDHA_APRA_LASPO"> + <entry ac="IPR030664" + desc="Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit" + name="SdhA/FrdA/AprA" type="FAMILY"/> + <models> + <model ac="PIRSF000171" name="SDHA_APRA_LASPO"/> + </models> + <signature-library-release library="PIRSF" version="3.01"/> + </signature> + <locations> + <hmmer3-location env-end="575" env-start="1" score="142.8" evalue="2.0E-42" hmm-start="3" + hmm-end="565" hmm-length="0" start="1" end="575"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="0.0" score="1214.6"> + <signature ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" + name="TIGR01176"> + <entry ac="IPR005884" desc="Fumarate reductase, flavoprotein subunit" name="Fum_red_fp" + type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0009061" name="anaerobic respiration"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <pathway-xref db="KEGG" id="00650+1.3.5.4" name="Butanoate metabolism"/> + <pathway-xref db="KEGG" id="00720+1.3.5.4" name="Carbon fixation pathways in prokaryotes"/> + <pathway-xref db="KEGG" id="00620+1.3.5.4" name="Pyruvate metabolism"/> + <pathway-xref db="MetaCyc" id="PWY-5913" name="Partial TCA cycle (obligate autotrophs)"/> + <pathway-xref db="KEGG" id="00020+1.3.5.4" name="Citrate cycle (TCA cycle)"/> + <pathway-xref db="MetaCyc" id="PWY-7384" + name="Anaerobic energy metabolism (invertebrates, mitochondrial)"/> + <pathway-xref db="MetaCyc" id="PWY-5392" name="Reductive TCA cycle II"/> + </entry> + <models> + <model ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" + name="TIGR01176"/> + </models> + <signature-library-release library="TIGRFAM" version="15.0"/> + </signature> + <locations> + <hmmer3-location env-end="582" env-start="3" score="1214.4" evalue="0.0" hmm-start="1" hmm-end="580" + hmm-length="0" start="3" end="582"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="4.2E-39" score="133.1"> + <signature ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="581" env-start="453" score="132.4" evalue="7.0E-39" hmm-start="1" + hmm-end="128" hmm-length="0" start="453" end="581"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="2.3E-18" score="65.2"> + <signature ac="G3DSA:4.10.80.40"> + <models> + <model ac="1kf6A04"/> + <model ac="2h88A04"/> + <model ac="2wdqA04"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="577" env-start="543" score="64.1" evalue="5.5E-18" hmm-start="1" + hmm-end="35" hmm-length="0" start="543" end="577"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.1E-115" score="386.8"> + <signature ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"> + <entry ac="IPR003953" desc="FAD-dependent oxidoreductase 2, FAD binding domain" name="FAD-binding_2" + type="DOMAIN"/> + <models> + <model ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="397" env-start="7" score="386.8" evalue="1.1E-115" hmm-start="1" + hmm-end="417" hmm-length="0" start="7" end="397"/> + </locations> + </hmmer3-match> + <panther-match evalue="0.0" familyName="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT" score="1520.5"> + <signature ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"> + <models> + <model ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"/> + </models> + <signature-library-release library="PANTHER" version="10.0"/> + </signature> + <locations> + <panther-location start="1" end="584"/> + </locations> + </panther-match> + <panther-match evalue="0.0" familyName="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT" score="1520.5"> + <signature ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"> + <models> + <model ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"/> + </models> + <signature-library-release library="PANTHER" version="10.0"/> + </signature> + <locations> + <panther-location start="1" end="584"/> + </locations> + </panther-match> + <patternscan-match> + <signature ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." + name="FRD_SDH_FAD_BINDING"> + <entry ac="IPR003952" desc="Fumarate reductase/succinate dehydrogenase, FAD-binding site" + name="FRD_SDH_FAD_BS" type="BINDING_SITE"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." + name="FRD_SDH_FAD_BINDING"/> + </models> + <signature-library-release library="PROSITE_PATTERNS" version="20.113"/> + </signature> + <locations> + <patternscan-location level="STRONG" start="43" end="52"> + <alignment>RSHTvaAeGG</alignment> + </patternscan-location> + </locations> + </patternscan-match> + <superfamilyhmmer3-match evalue="2.27E-71"> + <signature ac="SSF51905" name="FAD/NAD(P)-binding domain"> + <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="0048494" name="FAD/NAD(P)-binding domain"/> + <model ac="0052964" name="FAD/NAD(P)-binding domain"/> + <model ac="0038468" name="FAD/NAD(P)-binding domain"/> + <model ac="0050363" name="FAD/NAD(P)-binding domain"/> + <model ac="0052600" name="FAD/NAD(P)-binding domain"/> + <model ac="0048009" name="FAD/NAD(P)-binding domain"/> + <model ac="0045798" name="FAD/NAD(P)-binding domain"/> + <model ac="0053857" name="FAD/NAD(P)-binding domain"/> + <model ac="0052313" name="FAD/NAD(P)-binding domain"/> + <model ac="0047270" name="FAD/NAD(P)-binding domain"/> + <model ac="0045519" name="FAD/NAD(P)-binding domain"/> + <model ac="0048583" name="FAD/NAD(P)-binding domain"/> + <model ac="0044705" name="FAD/NAD(P)-binding domain"/> + <model ac="0050364" name="FAD/NAD(P)-binding domain"/> + <model ac="0050960" name="FAD/NAD(P)-binding domain"/> + <model ac="0046270" name="FAD/NAD(P)-binding domain"/> + <model ac="0047022" name="FAD/NAD(P)-binding domain"/> + <model ac="0036889" name="FAD/NAD(P)-binding domain"/> + <model ac="0047564" name="FAD/NAD(P)-binding domain"/> + <model ac="0040688" name="FAD/NAD(P)-binding domain"/> + <model ac="0046274" name="FAD/NAD(P)-binding domain"/> + <model ac="0036016" name="FAD/NAD(P)-binding domain"/> + <model ac="0046416" name="FAD/NAD(P)-binding domain"/> + <model ac="0037643" name="FAD/NAD(P)-binding domain"/> + <model ac="0054879" name="FAD/NAD(P)-binding domain"/> + <model ac="0044413" name="FAD/NAD(P)-binding domain"/> + <model ac="0038285" name="FAD/NAD(P)-binding domain"/> + <model ac="0040660" name="FAD/NAD(P)-binding domain"/> + <model ac="0040619" name="FAD/NAD(P)-binding domain"/> + <model ac="0046128" name="FAD/NAD(P)-binding domain"/> + <model ac="0046972" name="FAD/NAD(P)-binding domain"/> + <model ac="0046973" name="FAD/NAD(P)-binding domain"/> + <model ac="0047682" name="FAD/NAD(P)-binding domain"/> + <model ac="0040602" name="FAD/NAD(P)-binding domain"/> + <model ac="0047271" name="FAD/NAD(P)-binding domain"/> + <model ac="0040049" name="FAD/NAD(P)-binding domain"/> + <model ac="0052032" name="FAD/NAD(P)-binding domain"/> + <model ac="0052911" name="FAD/NAD(P)-binding domain"/> + <model ac="0036301" name="FAD/NAD(P)-binding 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name="FAD/NAD(P)-binding domain"/> + <model ac="0054159" name="FAD/NAD(P)-binding domain"/> + <model ac="0046750" name="FAD/NAD(P)-binding domain"/> + <model ac="0038449" name="FAD/NAD(P)-binding domain"/> + <model ac="0046761" name="FAD/NAD(P)-binding domain"/> + <model ac="0046760" name="FAD/NAD(P)-binding domain"/> + <model ac="0036092" name="FAD/NAD(P)-binding domain"/> + <model ac="0047133" name="FAD/NAD(P)-binding domain"/> + <model ac="0039664" name="FAD/NAD(P)-binding domain"/> + <model ac="0041341" name="FAD/NAD(P)-binding domain"/> + <model ac="0041940" name="FAD/NAD(P)-binding domain"/> + <model ac="0048199" name="FAD/NAD(P)-binding domain"/> + <model ac="0046751" name="FAD/NAD(P)-binding domain"/> + <model ac="0050961" name="FAD/NAD(P)-binding domain"/> + <model ac="0045881" name="FAD/NAD(P)-binding domain"/> + <model ac="0043577" name="FAD/NAD(P)-binding domain"/> + <model ac="0047068" name="FAD/NAD(P)-binding domain"/> + <model ac="0053322" name="FAD/NAD(P)-binding 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name="FAD/NAD(P)-binding domain"/> + <model ac="0045870" name="FAD/NAD(P)-binding domain"/> + <model ac="0049930" name="FAD/NAD(P)-binding domain"/> + <model ac="0045797" name="FAD/NAD(P)-binding domain"/> + <model ac="0054078" name="FAD/NAD(P)-binding domain"/> + <model ac="0040035" name="FAD/NAD(P)-binding domain"/> + <model ac="0053967" name="FAD/NAD(P)-binding domain"/> + <model ac="0049679" name="FAD/NAD(P)-binding domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="361" end="415"/> + <superfamilyhmmer3-location start="2" end="250"/> + </locations> + </superfamilyhmmer3-match> + <superfamilyhmmer3-match evalue="3.01E-46"> + <signature ac="SSF46977" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="0035988" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0048345" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0052031" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0040048" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0039663" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="444" end="590"/> + </locations> + </superfamilyhmmer3-match> + <superfamilyhmmer3-match evalue="6.88E-43"> + <signature ac="SSF56425" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"> + <entry ac="IPR027477" + desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" + name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> + <models> + <model ac="0039665" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0052033" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0036733" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0036265" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0040050" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0035990" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0041342" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0042899" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="227" end="358"/> + </locations> + </superfamilyhmmer3-match> + </matches> + </protein> + <protein> + <sequence md5="abfa044baa298f169ea62ac6b48e1185">MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES</sequence> + <xref desc="SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1" + db="sp" id="C1P5Z7" name="Putative inhibitor of glucose uptake transporter SgrT"/> + <matches> + <hmmer3-match evalue="8.8E-12" score="44.3"> + <signature ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"> + <entry ac="IPR031767" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT" type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0046325" + name="negative regulation of glucose import"/> + </entry> + <models> + <model ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="41" env-start="1" score="44.0" evalue="1.0E-11" hmm-start="2" hmm-end="39" + hmm-length="0" start="2" end="37"/> + </locations> + </hmmer3-match> + </matches> + </protein> + <protein> + <sequence md5="9ec8e26fcf5c160f533bf9a69dec0212">MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI</sequence> + <xref desc="DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1" + db="sp" id="P00370" name="NADP-specific glutamate dehydrogenase"/> + <matches> + <fingerprints-match evalue="2.5E-33" graphscan="IIII"> + <signature ac="PR00082" desc="Glutamate/leucine/phenylalanine/valine dehydrogenase signature" + name="GLFDHDRGNASE"> + <entry ac="IPR006095" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase" + name="Glu/Leu/Phe/Val_DH" type="FAMILY"> + 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domain-like"/> + <model ac="0049729" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0051872" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0054551" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0041099" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0052328" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0042306" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0048756" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0045524" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0054910" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0052564" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0040515" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0054098" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0053659" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0051796" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0050268" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0044958" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0037218" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0038855" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + <model ac="0037318" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="177" end="467"/> + </locations> + </superfamilyhmmer3-match> + </matches> + </protein> +</protein-matches>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-p/input.fasta Tue Feb 02 12:27:19 2016 -0500 @@ -0,0 +1,32 @@ +>sp|C1P5Z7|SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1 +MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES +>sp|P00350|6PGD_ECOLI 6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2 +MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF +VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF +NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH +YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT +KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS +KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF +RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT +FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD +>sp|P00363|FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3 +MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH +DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM +KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT +LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS +GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR +KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG +GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN +GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL +AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC +TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA +NG +>sp|P00370|DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1 +MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV +IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT +TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA +GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS +GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF +GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ +QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG +EQTNYVQGANIAGFVKVADAMLAQGVI
--- a/interproscan5/data/__base__.gff3 Fri Jan 29 18:41:29 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,377 +0,0 @@ -##gff-version 3 -##feature-ontology http://song.cvs.sourceforge.net/viewvc/song/ontology/sofa.obo?revision=1.269 -##sequence-region P00363 1 602 -P00363 . polypeptide 1 602 . + . md5=0d2c0f1acdd08ab0157f2308531a58e4;ID=P00363 -P00363 SUPERFAMILY protein_match 361 415 2.27E-71 + . Name=SSF51905;Target=P00363 361 415;status=T;ID=match$1_361_415;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" -P00363 SUPERFAMILY protein_match 2 250 2.27E-71 + . Name=SSF51905;Target=P00363 2 250;status=T;ID=match$1_2_250;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" -P00363 TIGRFAM protein_match 7 581 4.7E-250 + . Name=TIGR01812;signature_desc=sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit;Target=P00363 7 581;status=T;ID=match$2_7_581;Ontology_term="GO:0016627","GO:0022900","GO:0050660","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR014006" -P00363 Gene3D protein_match 234 352 3.6E-37 + . Name=G3DSA:3.90.700.10;Target=P00363 234 352;status=T;ID=match$3_234_352;date=24-01-2016;Dbxref="InterPro:IPR027477" -P00363 PRINTS protein_match 375 382 2.5E-5 + . Name=PR00411;signature_desc=Pyridine nucleotide disulphide reductase class-I signature;Target=P00363 375 382;status=T;ID=match$4_375_382;date=24-01-2016 -P00363 PRINTS protein_match 7 29 2.5E-5 + . Name=PR00411;signature_desc=Pyridine nucleotide disulphide reductase class-I signature;Target=P00363 7 29;status=T;ID=match$4_7_29;date=24-01-2016 -P00363 Gene3D protein_match 426 537 1.5E-38 + . Name=G3DSA:1.20.58.100;Target=P00363 426 537;status=T;ID=match$5_426_537;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" -P00363 Coils protein_match 423 443 . + . Name=Coil;Target=P00363 423 443;status=T;ID=match$6_423_443;date=24-01-2016 -P00363 Gene3D protein_match 353 416 5.9E-106 + . Name=G3DSA:3.50.50.60;Target=P00363 353 416;status=T;ID=match$7_353_416;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" -P00363 Gene3D protein_match 2 233 5.9E-106 + . Name=G3DSA:3.50.50.60;Target=P00363 2 233;status=T;ID=match$7_2_233;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR023753" -P00363 PANTHER protein_match 1 584 0.0 + . Name=PTHR11632;Target=P00363 1 584;status=T;ID=match$8_1_584;date=24-01-2016 -P00363 SUPERFAMILY protein_match 444 590 3.01E-46 + . Name=SSF46977;Target=P00363 444 590;status=T;ID=match$9_444_590;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" -P00363 PANTHER protein_match 1 584 0.0 + . Name=PTHR11632:SF50;Target=P00363 1 584;status=T;ID=match$10_1_584;date=24-01-2016 -P00363 PIRSF protein_match 1 575 2.0E-42 + . Name=PIRSF000171;Target=P00363 1 575;status=T;ID=match$11_1_575;date=24-01-2016;Dbxref="InterPro:IPR030664" -P00363 TIGRFAM protein_match 3 582 0.0 + . Name=TIGR01176;signature_desc=fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit;Target=P00363 3 582;status=T;ID=match$12_3_582;Ontology_term="GO:0009061","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR005884" -P00363 Pfam protein_match 453 581 7.0E-39 + . Name=PF02910;signature_desc=Fumarate reductase flavoprotein C-term;Target=P00363 453 581;status=T;ID=match$13_453_581;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR015939" -P00363 Coils protein_match 473 493 . + . Name=Coil;Target=P00363 473 493;status=T;ID=match$14_473_493;date=24-01-2016 -P00363 ProSitePatterns protein_match 43 52 . + . Name=PS00504;signature_desc=Fumarate reductase / succinate dehydrogenase FAD-binding site.;Target=P00363 43 52;status=T;ID=match$15_43_52;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR003952" -P00363 Gene3D protein_match 543 577 5.5E-18 + . Name=G3DSA:4.10.80.40;Target=P00363 543 577;status=T;ID=match$16_543_577;date=24-01-2016 -P00363 SUPERFAMILY protein_match 227 358 6.88E-43 + . Name=SSF56425;Target=P00363 227 358;status=T;ID=match$17_227_358;date=24-01-2016;Dbxref="InterPro:IPR027477" -P00363 Pfam protein_match 7 397 1.1E-115 + . Name=PF00890;signature_desc=FAD binding domain;Target=P00363 7 397;status=T;ID=match$18_7_397;date=24-01-2016;Dbxref="InterPro:IPR003953" -P00363 PRINTS protein_match 8 27 3.0E-10 + . Name=PR00368;signature_desc=FAD-dependent pyridine nucleotide reductase signature;Target=P00363 8 27;status=T;ID=match$19_8_27;date=24-01-2016 -P00363 PRINTS protein_match 360 382 3.0E-10 + . Name=PR00368;signature_desc=FAD-dependent pyridine nucleotide reductase signature;Target=P00363 360 382;status=T;ID=match$19_360_382;date=24-01-2016 -##sequence-region P00350 1 468 -P00350 . polypeptide 1 468 . + . md5=1776f92beb74ff0ccd9ac47a65663644;ID=P00350 -P00350 SUPERFAMILY protein_match 4 173 4.86E-50 + . Name=SSF51735;Target=P00350 4 173;status=T;ID=match$20_4_173;date=24-01-2016;Dbxref="InterPro:IPR016040" -P00350 TIGRFAM protein_match 5 467 1.1E-232 + . Name=TIGR00873;signature_desc=gnd: 6-phosphogluconate dehydrogenase (decarboxylating);Target=P00350 5 467;status=T;ID=match$21_5_467;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006113" -P00350 Gene3D protein_match 1 180 1.9E-61 + . Name=G3DSA:3.40.50.720;Target=P00350 1 180;status=T;ID=match$22_1_180;date=24-01-2016;Dbxref="InterPro:IPR016040" -P00350 Pfam protein_match 3 174 1.8E-52 + . Name=PF03446;signature_desc=NAD binding domain of 6-phosphogluconate dehydrogenase;Target=P00350 3 174;status=T;ID=match$23_3_174;Ontology_term="GO:0004616","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006115" -P00350 PIRSF protein_match 1 468 1.9E-243 + . Name=PIRSF000109;Target=P00350 1 468;status=T;ID=match$24_1_468;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006113" -P00350 ProSitePatterns protein_match 253 265 . + . Name=PS00461;signature_desc=6-phosphogluconate dehydrogenase signature.;Target=P00350 253 265;status=T;ID=match$25_253_265;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006184" -P00350 Gene3D protein_match 181 433 1.0E-119 + . Name=G3DSA:1.10.1040.10;Target=P00350 181 433;status=T;ID=match$26_181_433;Ontology_term="GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR013328" -P00350 Gene3D protein_match 436 467 1.4E-22 + . Name=G3DSA:1.20.5.320;Target=P00350 436 467;status=T;ID=match$27_436_467;date=24-01-2016;Dbxref="InterPro:IPR012284" -P00350 PRINTS protein_match 249 276 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 249 276;status=T;ID=match$28_249_276;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" -P00350 PRINTS protein_match 168 196 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 168 196;status=T;ID=match$28_168_196;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" -P00350 PRINTS protein_match 66 95 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 66 95;status=T;ID=match$28_66_95;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" -P00350 PRINTS protein_match 119 144 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 119 144;status=T;ID=match$28_119_144;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" -P00350 PRINTS protein_match 4 27 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 4 27;status=T;ID=match$28_4_27;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" -P00350 PRINTS protein_match 356 378 1.521867E-89 + . Name=PR00076;signature_desc=6-phosphogluconate dehydrogenase signature;Target=P00350 356 378;status=T;ID=match$28_356_378;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006183" -P00350 PANTHER protein_match 1 466 7.6E-305 + . Name=PTHR11811:SF25;Target=P00350 1 466;status=T;ID=match$29_1_466;date=24-01-2016 -P00350 PANTHER protein_match 1 466 7.6E-305 + . Name=PTHR11811;Target=P00350 1 466;status=T;ID=match$30_1_466;date=24-01-2016 -P00350 Pfam protein_match 179 466 2.0E-132 + . Name=PF00393;signature_desc=6-phosphogluconate dehydrogenase, C-terminal domain;Target=P00350 179 466;status=T;ID=match$31_179_466;Ontology_term="GO:0004616","GO:0006098","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006114" -P00350 SUPERFAMILY protein_match 177 467 6.8E-132 + . Name=SSF48179;Target=P00350 177 467;status=T;ID=match$32_177_467;Ontology_term="GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR008927" -##sequence-region P00370 1 447 -P00370 . polypeptide 1 447 . + . md5=9ec8e26fcf5c160f533bf9a69dec0212;ID=P00370 -P00370 PRINTS protein_match 372 383 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 372 383;status=T;ID=match$33_372_383;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" -P00370 PRINTS protein_match 114 128 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 114 128;status=T;ID=match$33_114_128;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" -P00370 PRINTS protein_match 235 255 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 235 255;status=T;ID=match$33_235_255;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" -P00370 PRINTS protein_match 193 215 2.5E-33 + . Name=PR00082;signature_desc=Glutamate/leucine/phenylalanine/valine dehydrogenase signature;Target=P00370 193 215;status=T;ID=match$33_193_215;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" -P00370 SUPERFAMILY protein_match 6 196 6.72E-74 + . Name=SSF53223;Target=P00370 6 196;status=T;ID=match$34_6_196;date=24-01-2016 -P00370 Gene3D protein_match 68 188 1.0E-60 + . Name=G3DSA:3.40.192.10;Target=P00370 68 188;status=T;ID=match$35_68_188;date=24-01-2016 -P00370 Pfam protein_match 202 445 1.3E-87 + . Name=PF00208;signature_desc=Glutamate/Leucine/Phenylalanine/Valine dehydrogenase;Target=P00370 202 445;status=T;ID=match$36_202_445;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006096" -P00370 PIRSF protein_match 22 447 1.8E-114 + . Name=PIRSF000185;Target=P00370 22 447;status=T;ID=match$37_22_447;Ontology_term="GO:0016639","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR014362" -P00370 SMART protein_match 204 445 2.0E-93 + . Name=SM00839;signature_desc=Glutamate/Leucine/Phenylalanine/Valine dehydrogenase;Target=P00370 204 445;status=T;ID=match$38_204_445;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006096" -P00370 Gene3D protein_match 209 372 1.6E-63 + . Name=G3DSA:3.40.50.720;Target=P00370 209 372;status=T;ID=match$39_209_372;date=24-01-2016;Dbxref="InterPro:IPR016040" -P00370 SUPERFAMILY protein_match 202 446 4.96E-77 + . Name=SSF51735;Target=P00370 202 446;status=T;ID=match$40_202_446;date=24-01-2016;Dbxref="InterPro:IPR016040" -P00370 Gene3D protein_match 7 67 8.2E-28 + . Name=G3DSA:1.10.285.10;Target=P00370 7 67;status=T;ID=match$41_7_67;date=24-01-2016 -P00370 Gene3D protein_match 373 446 2.0E-26 + . Name=G3DSA:1.10.285.10;Target=P00370 373 446;status=T;ID=match$41_373_446;date=24-01-2016 -P00370 ProSitePatterns protein_match 122 135 . + . Name=PS00074;signature_desc=Glu / Leu / Phe / Val dehydrogenases active site.;Target=P00370 122 135;status=T;ID=match$42_122_135;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006095" -P00370 Pfam protein_match 57 184 6.3E-49 + . Name=PF02812;signature_desc=Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;Target=P00370 57 184;status=T;ID=match$43_57_184;Ontology_term="GO:0006520","GO:0016491","GO:0055114";date=24-01-2016;Dbxref="InterPro:IPR006097" -P00370 PANTHER protein_match 1 447 3.2E-250 + . Name=PTHR11606;Target=P00370 1 447;status=T;ID=match$44_1_447;date=24-01-2016 -P00370 PANTHER protein_match 1 447 3.2E-250 + . Name=PTHR11606:SF4;Target=P00370 1 447;status=T;ID=match$45_1_447;date=24-01-2016 -##sequence-region C1P5Z7 1 43 -C1P5Z7 . polypeptide 1 43 . + . md5=abfa044baa298f169ea62ac6b48e1185;ID=C1P5Z7 -C1P5Z7 Pfam protein_match 2 37 1.0E-11 + . Name=PF15894;signature_desc=Inhibitor of glucose uptake transporter SgrT;Target=C1P5Z7 2 37;status=T;ID=match$46_2_37;Ontology_term="GO:0046325";date=24-01-2016;Dbxref="InterPro:IPR031767" -##FASTA ->C1P5Z7 -MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES ->P00350 -MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF -VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF -NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH -YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT -KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS -KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF -RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT -FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD ->P00363 -MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH -DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM -KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT -LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS -GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR -KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG -GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN -GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL -AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC -TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA -NG ->P00370 -MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV -IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT -TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA -GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS -GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF -GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ -QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG -EQTNYVQGANIAGFVKVADAMLAQGVI ->match$1_2_250 -QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD -SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK -IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL -VQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSG -ILMTEGCRG ->match$1_361_415 -GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERA ->match$2_7_581 -DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYH -FHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTW -FAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRA -NAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE -GCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS -TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ -NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAI -EAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQER -FKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDV -NFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVY ->match$3_234_352 -PTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQ -AFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVR ->match$4_7_29 -DLAIVGAGGAGLRAAIAAAQANP ->match$4_375_382 -LFAVGECS ->match$5_426_537 -IEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQE -RFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD ->match$6_423_443 -EAAIEAQAAGVEQRLKDLVNQ ->match$7_2_233 -QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD -SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK -IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTL -VQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYH ->match$7_353_416 -PTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT -ERAA ->match$8_1_584 -MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH -DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM -KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT -LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS -GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR -KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG -GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN -GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL -AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC -TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGE ->match$9_444_590 -DGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDL -LYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTR -LEYSDVKITTLPPAKRVYGGEADAADK ->match$10_1_584 -MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH -DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM -KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT -LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS -GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR -KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG -GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN -GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL -AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC -TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGE ->match$11_1_575 -MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH -DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM -KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT -LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS -GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR -KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG -GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN -GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL -AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC -TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLP ->match$12_3_582 -TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS -FEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKI -ERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLV -QIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI -LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKG -NTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGI -ETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGN -EAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAE -LQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTE -RDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYG ->match$13_453_581 -RDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHG -LNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKIT -TLPPAKRVY ->match$14_473_493 -MQKTIDKLAELQERFKRVRIT ->match$15_43_52 -RSHTVAAEGG ->match$16_543_577 -RDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPA ->match$17_227_358 -MEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELG -PRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVK -EPIPVRPTAHYT ->match$18_7_397 -DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYH -FHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTW -FAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRA -NAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE -GCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS -TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ -NCETRIKGLFAVGECSSVGLHGANRLGSNSL ->match$19_8_27 -LAIVGAGGAGLRAAIAAAQA ->match$19_360_382 -GGIETDQNCETRIKGLFAVGECS ->match$20_4_173 -QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVES -LETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI -GTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYI ->match$21_5_467 -QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL -ETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG -TGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKM -VHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDE -DGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLS -GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGC -IIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAA -VAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL ->match$22_1_180 -MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF -VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF -NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH ->match$23_3_174 -KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE -SLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF -IGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG ->match$24_1_468 -MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF -VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF -NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH -YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT -KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS -KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF -RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT -FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD ->match$25_253_265 -ILDEAANKGTGKW ->match$26_181_433 -YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT -KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS -KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF -RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT -FSAAVAYYDSYRA ->match$27_436_467 -LPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL ->match$28_4_27 -QQIGVVGMAVMGRNLALNIESRGY ->match$28_66_95 -TPRRILLMVKAGAGTDAAIDSLKPYLDKGD ->match$28_119_144 -GFNFIGTGVSGGEEGALKGPSIMPGG ->match$28_168_196 -PCVTYIGADGAGHYVKMVHNGIEYGDMQL ->match$28_249_276 -LVDVILDEAANKGTGKWTSQSALDLGEP ->match$28_356_378 -IAKIFRAGCIIRAQFLQKITDAY ->match$29_1_466 -MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF -VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF -NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH -YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT -KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS -KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF -RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT -FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW ->match$30_1_466 -MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF -VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF -NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH -YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT -KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS -KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF -RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT -FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW ->match$31_179_466 -GHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDI -FTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVA -ASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAK -IFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPV -PTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW ->match$32_177_467 -GAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK -DIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQR -VAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI -AKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI -PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL ->match$33_114_128 -TFKNALTTLPMGGGK ->match$33_193_215 -VFTGKGLSFGGSLIRPEATGYGL ->match$33_235_255 -VSVSGSGNVAQYAIEKAMEFG ->match$33_372_383 -ANAGGVATSGLE ->match$34_6_196 -SLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRV -VWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMG -GGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKK -LSNNTACVFTG ->match$35_68_188 -VDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGG -KGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLS -N ->match$36_202_445 -GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA -SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC -ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG -LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM -LAQG ->match$37_22_447 -TEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWR -VQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEG -EVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSF -GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA -SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC -ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG -LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM -LAQGVI ->match$38_204_445 -SLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD -SSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCAT -QNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLE -MAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLA -QG ->match$39_209_372 -EATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTV -VDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELD -VDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAA ->match$40_202_446 -GGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA -SDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPC -ATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSG -LEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAM -LAQGV ->match$41_7_67 -LESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVV -W ->match$41_373_446 -NAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIA -GFVKVADAMLAQGV ->match$42_122_135 -LPMGGGKGGSDFDP ->match$43_57_184 -PERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFK -NALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREV -GFMAGMMK ->match$44_1_447 -MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV -IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT -TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA -GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS -GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF -GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ -QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG -EQTNYVQGANIAGFVKVADAMLAQGVI ->match$45_1_447 -MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV -IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT -TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA -GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS -GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF -GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ -QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG -EQTNYVQGANIAGFVKVADAMLAQGVI ->match$46_2_37 -RQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWD
--- a/interproscan5/data/__base__.tsv Fri Jan 29 18:41:29 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,59 +0,0 @@ -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF51905 361 415 2.27E-71 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF51905 2 250 2.27E-71 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 4.7E-250 T 24-01-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.90.700.10 234 352 3.6E-37 T 24-01-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.5E-5 T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.5E-5 T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:1.20.58.100 426 537 1.5E-38 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Coils Coil 423 443 - T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.50.50.60 353 416 5.9E-106 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:3.50.50.60 2 233 5.9E-106 T 24-01-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PANTHER PTHR11632 1 584 0.0 T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF46977 444 590 3.01E-46 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PANTHER PTHR11632:SF50 1 584 0.0 T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PIRSF PIRSF000171 1 575 2.0E-42 T 24-01-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 24-01-2016 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 7.0E-39 T 24-01-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Coils Coil 473 493 - T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 24-01-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Gene3D G3DSA:4.10.80.40 543 577 5.5E-18 T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 SUPERFAMILY SSF56425 227 358 6.88E-43 T 24-01-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 Pfam PF00890 FAD binding domain 7 397 1.1E-115 T 24-01-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.0E-10 T 24-01-2016 -P00363 0d2c0f1acdd08ab0157f2308531a58e4 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 3.0E-10 T 24-01-2016 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 SUPERFAMILY SSF51735 4 173 4.86E-50 T 24-01-2016 IPR016040 NAD(P)-binding domain -P00350 1776f92beb74ff0ccd9ac47a65663644 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 467 1.1E-232 T 24-01-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:3.40.50.720 1 180 1.9E-61 T 24-01-2016 IPR016040 NAD(P)-binding domain -P00350 1776f92beb74ff0ccd9ac47a65663644 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 174 1.8E-52 T 24-01-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PIRSF PIRSF000109 1 468 1.9E-243 T 24-01-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 24-01-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:1.10.1040.10 181 433 1.0E-119 T 24-01-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 Gene3D G3DSA:1.20.5.320 436 467 1.4E-22 T 24-01-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.521867E-89 T 24-01-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PANTHER PTHR11811:SF25 1 466 7.6E-305 T 24-01-2016 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 PANTHER PTHR11811 1 466 7.6E-305 T 24-01-2016 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 466 2.0E-132 T 24-01-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 -P00350 1776f92beb74ff0ccd9ac47a65663644 468 SUPERFAMILY SSF48179 177 467 6.8E-132 T 24-01-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 2.5E-33 T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SUPERFAMILY SSF53223 6 196 6.72E-74 T 24-01-2016 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:3.40.192.10 68 188 1.0E-60 T 24-01-2016 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 1.3E-87 T 24-01-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PIRSF PIRSF000185 22 447 1.8E-114 T 24-01-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SMART SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 204 445 2.0E-93 T 24-01-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:3.40.50.720 209 372 1.6E-63 T 24-01-2016 IPR016040 NAD(P)-binding domain -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 SUPERFAMILY SSF51735 202 446 4.96E-77 T 24-01-2016 IPR016040 NAD(P)-binding domain -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:1.10.285.10 7 67 8.2E-28 T 24-01-2016 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Gene3D G3DSA:1.10.285.10 373 446 2.0E-26 T 24-01-2016 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 24-01-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 6.3E-49 T 24-01-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PANTHER PTHR11606 1 447 3.2E-250 T 24-01-2016 -P00370 9ec8e26fcf5c160f533bf9a69dec0212 447 PANTHER PTHR11606:SF4 1 447 3.2E-250 T 24-01-2016 -C1P5Z7 abfa044baa298f169ea62ac6b48e1185 43 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 2 37 1.0E-11 T 24-01-2016 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325
--- a/interproscan5/data/__base__.xml Fri Jan 29 18:41:29 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2204 +0,0 @@ -<?xml version="1.0" encoding="UTF-8" standalone="yes"?> -<protein-matches xmlns="http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5"> - <protein> - <sequence md5="0d2c0f1acdd08ab0157f2308531a58e4">MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG</sequence> - <xref desc="FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3" - db="sp" id="P00363" name="Fumarate reductase flavoprotein subunit"/> - <matches> - <coils-match> - <signature ac="Coil" name="Coil"> - <signature-library-release library="COILS" version="2.2.1"/> - </signature> - <locations> - <coils-location start="423" end="443"/> - </locations> - </coils-match> - <coils-match> - <signature ac="Coil" name="Coil"> - <signature-library-release library="COILS" version="2.2.1"/> - </signature> - <locations> - <coils-location start="473" end="493"/> - </locations> - </coils-match> - <fingerprints-match evalue="2.5E-5" graphscan="I....I..."> - <signature ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" - name="PNDRDTASEI"> - <models> - <model ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" - name="PNDRDTASEI"/> - </models> - <signature-library-release library="PRINTS" version="42.0"/> - </signature> - <locations> - <fingerprints-location motifNumber="6" pvalue="0.0222" score="30.15" start="375" end="382"/> - <fingerprints-location motifNumber="1" pvalue="4.15E-10" score="41.52" start="7" end="29"/> - </locations> - </fingerprints-match> - <fingerprints-match evalue="3.0E-10" graphscan="I...I"> - <signature ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"> - <models> - <model ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"/> - </models> - <signature-library-release library="PRINTS" version="42.0"/> - </signature> - <locations> - <fingerprints-location motifNumber="1" pvalue="4.72E-9" score="47.18" start="8" end="27"/> - <fingerprints-location motifNumber="5" pvalue="3.2E-8" score="30.52" start="360" end="382"/> - </locations> - </fingerprints-match> - <hmmer3-match evalue="4.2E-250" score="829.0"> - <signature ac="TIGR01812" - desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" - name="TIGR01812"> - <entry ac="IPR014006" desc="Succinate dehydrogenase/fumarate reductase, flavoprotein subunit" - name="Succ_Dhase_FrdA_Gneg" type="FAMILY"> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016627" - name="oxidoreductase activity, acting on the CH-CH group of donors"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0022900" name="electron transport chain"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0050660" - name="flavin adenine dinucleotide binding"/> - <pathway-xref db="KEGG" id="00020+1.3.5.1" name="Citrate cycle (TCA cycle)"/> - <pathway-xref db="KEGG" id="00650+1.3.5.1" name="Butanoate metabolism"/> - <pathway-xref db="KEGG" id="00190+1.3.5.1" name="Oxidative phosphorylation"/> - <pathway-xref db="MetaCyc" id="PWY-561" - name="Superpathway of glyoxylate cycle and fatty acid degradation"/> - <pathway-xref db="KEGG" id="00720+1.3.5.1" name="Carbon fixation pathways in prokaryotes"/> - <pathway-xref db="MetaCyc" id="PWY-5690" name="TCA cycle II (plants and fungi)"/> - <pathway-xref db="MetaCyc" id="PWY-7254" name="TCA cycle VII (acetate-producers)"/> - <pathway-xref db="MetaCyc" id="PWY-6969" - name="TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"/> - <pathway-xref db="MetaCyc" id="PWY-6728" name="Methylaspartate cycle"/> - <pathway-xref db="MetaCyc" id="PWY-4302" - name="Aerobic respiration III (alternative oxidase pathway)"/> - <pathway-xref db="MetaCyc" id="PWY-7279" name="Aerobic respiration II (cytochrome c) (yeast)"/> - <pathway-xref db="MetaCyc" id="PWY-3781" name="Aerobic respiration I (cytochrome c)"/> - </entry> - <models> - <model ac="TIGR01812" - desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" - name="TIGR01812"/> - </models> - <signature-library-release library="TIGRFAM" version="15.0"/> - </signature> - <locations> - <hmmer3-location env-end="581" env-start="7" score="828.8" evalue="4.7E-250" hmm-start="1" - hmm-end="568" hmm-length="0" start="7" end="581"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="1.6E-37" score="127.8"> - <signature ac="G3DSA:3.90.700.10"> - <entry ac="IPR027477" - desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" - name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> - <models> - <model ac="1y0pA03"/> - <model ac="1jnrA02"/> - <model ac="1chuA02"/> - <model ac="2bs2A02"/> - </models> - <signature-library-release library="GENE3D" version="3.5.0"/> - </signature> - <locations> - <hmmer3-location env-end="352" env-start="230" score="126.6" evalue="3.6E-37" hmm-start="1" - hmm-end="107" hmm-length="0" start="234" end="352"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="9.1E-39" score="131.9"> - <signature ac="G3DSA:1.20.58.100"> - <entry ac="IPR015939" - desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" - name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - </entry> - <models> - <model ac="2bs2A03"/> - <model ac="1kf6A03"/> - <model ac="1knrA03"/> - <model ac="2h88A03"/> - <model ac="2wdqA03"/> - <model ac="1jnrA03"/> - <model ac="1chuA03"/> - </models> - <signature-library-release library="GENE3D" version="3.5.0"/> - </signature> - <locations> - <hmmer3-location env-end="541" env-start="423" score="131.2" evalue="1.5E-38" hmm-start="4" - hmm-end="115" hmm-length="0" start="426" end="537"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="4.0E-106" score="354.2"> - <signature ac="G3DSA:3.50.50.60"> - <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - </entry> - <models> - <model ac="1chuA01"/> - <model ac="1fl2A01"/> - <model ac="1d5tA01"/> - <model ac="1xdiA02"/> - 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</locations> - </hmmer3-match> - <hmmer3-match evalue="8.5E-43" score="144.0"> - <signature ac="PIRSF000171" name="SDHA_APRA_LASPO"> - <entry ac="IPR030664" - desc="Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit" - name="SdhA/FrdA/AprA" type="FAMILY"/> - <models> - <model ac="PIRSF000171" name="SDHA_APRA_LASPO"/> - </models> - <signature-library-release library="PIRSF" version="3.01"/> - </signature> - <locations> - <hmmer3-location env-end="575" env-start="1" score="142.8" evalue="2.0E-42" hmm-start="3" - hmm-end="565" hmm-length="0" start="1" end="575"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="0.0" score="1214.6"> - <signature ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" - name="TIGR01176"> - <entry ac="IPR005884" desc="Fumarate reductase, flavoprotein subunit" name="Fum_red_fp" - type="FAMILY"> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - 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</signature> - <locations> - <hmmer3-location env-end="582" env-start="3" score="1214.4" evalue="0.0" hmm-start="1" hmm-end="580" - hmm-length="0" start="3" end="582"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="4.2E-39" score="133.1"> - <signature ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"> - <entry ac="IPR015939" - desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" - name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - </entry> - <models> - <model ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"/> - </models> - <signature-library-release library="PFAM" version="28.0"/> - </signature> - <locations> - <hmmer3-location env-end="581" env-start="453" score="132.4" evalue="7.0E-39" hmm-start="1" - 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<signature ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." - name="FRD_SDH_FAD_BINDING"> - <entry ac="IPR003952" desc="Fumarate reductase/succinate dehydrogenase, FAD-binding site" - name="FRD_SDH_FAD_BS" type="BINDING_SITE"> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - </entry> - <models> - <model ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." - name="FRD_SDH_FAD_BINDING"/> - </models> - <signature-library-release library="PROSITE_PATTERNS" version="20.113"/> - </signature> - <locations> - <patternscan-location level="STRONG" start="43" end="52"> - <alignment>RSHTvaAeGG</alignment> - </patternscan-location> - </locations> - </patternscan-match> - <superfamilyhmmer3-match evalue="2.27E-71"> - <signature ac="SSF51905" name="FAD/NAD(P)-binding domain"> - <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> - 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<model ac="0047682" name="FAD/NAD(P)-binding domain"/> - <model ac="0040602" name="FAD/NAD(P)-binding domain"/> - <model ac="0047271" name="FAD/NAD(P)-binding domain"/> - <model ac="0040049" name="FAD/NAD(P)-binding domain"/> - <model ac="0052032" name="FAD/NAD(P)-binding domain"/> - <model ac="0052911" name="FAD/NAD(P)-binding domain"/> - <model ac="0036301" name="FAD/NAD(P)-binding domain"/> - <model ac="0046446" name="FAD/NAD(P)-binding domain"/> - <model ac="0042446" name="FAD/NAD(P)-binding domain"/> - <model ac="0044098" name="FAD/NAD(P)-binding domain"/> - <model ac="0047029" name="FAD/NAD(P)-binding domain"/> - <model ac="0048584" name="FAD/NAD(P)-binding domain"/> - <model ac="0052926" name="FAD/NAD(P)-binding domain"/> - <model ac="0048200" name="FAD/NAD(P)-binding domain"/> - <model ac="0036654" name="FAD/NAD(P)-binding domain"/> - <model ac="0048365" name="FAD/NAD(P)-binding domain"/> - <model ac="0048045" name="FAD/NAD(P)-binding domain"/> - <model ac="0035989" name="FAD/NAD(P)-binding domain"/> - <model ac="0045518" name="FAD/NAD(P)-binding domain"/> - <model ac="0036300" name="FAD/NAD(P)-binding domain"/> - <model ac="0048865" name="FAD/NAD(P)-binding domain"/> - <model ac="0049150" name="FAD/NAD(P)-binding domain"/> - <model ac="0046344" name="FAD/NAD(P)-binding domain"/> - <model ac="0046514" name="FAD/NAD(P)-binding domain"/> - <model ac="0047565" name="FAD/NAD(P)-binding domain"/> - <model ac="0054159" name="FAD/NAD(P)-binding domain"/> - <model ac="0046750" name="FAD/NAD(P)-binding domain"/> - <model ac="0038449" name="FAD/NAD(P)-binding domain"/> - <model ac="0046761" name="FAD/NAD(P)-binding domain"/> - <model ac="0046760" name="FAD/NAD(P)-binding domain"/> - <model ac="0036092" name="FAD/NAD(P)-binding domain"/> - <model ac="0047133" name="FAD/NAD(P)-binding domain"/> - <model ac="0039664" name="FAD/NAD(P)-binding domain"/> - <model ac="0041341" name="FAD/NAD(P)-binding domain"/> - <model ac="0041940" name="FAD/NAD(P)-binding domain"/> - <model ac="0048199" name="FAD/NAD(P)-binding domain"/> - <model ac="0046751" name="FAD/NAD(P)-binding domain"/> - <model ac="0050961" name="FAD/NAD(P)-binding domain"/> - <model ac="0045881" name="FAD/NAD(P)-binding domain"/> - <model ac="0043577" name="FAD/NAD(P)-binding domain"/> - <model ac="0047068" name="FAD/NAD(P)-binding domain"/> - <model ac="0053322" name="FAD/NAD(P)-binding domain"/> - <model ac="0054729" name="FAD/NAD(P)-binding domain"/> - <model ac="0052963" name="FAD/NAD(P)-binding domain"/> - <model ac="0049222" name="FAD/NAD(P)-binding domain"/> - <model ac="0050927" name="FAD/NAD(P)-binding domain"/> - <model ac="0050148" name="FAD/NAD(P)-binding domain"/> - <model ac="0037441" name="FAD/NAD(P)-binding domain"/> - <model ac="0048866" name="FAD/NAD(P)-binding domain"/> - <model ac="0048771" name="FAD/NAD(P)-binding domain"/> - <model ac="0048356" name="FAD/NAD(P)-binding domain"/> - <model ac="0053321" name="FAD/NAD(P)-binding domain"/> - <model ac="0049003" name="FAD/NAD(P)-binding domain"/> - <model ac="0048607" name="FAD/NAD(P)-binding domain"/> - <model ac="0038074" name="FAD/NAD(P)-binding domain"/> - <model ac="0048108" name="FAD/NAD(P)-binding domain"/> - <model ac="0047712" name="FAD/NAD(P)-binding domain"/> - <model ac="0048364" name="FAD/NAD(P)-binding domain"/> - <model ac="0046579" name="FAD/NAD(P)-binding domain"/> - <model ac="0046834" name="FAD/NAD(P)-binding domain"/> - <model ac="0045870" name="FAD/NAD(P)-binding domain"/> - <model ac="0049930" name="FAD/NAD(P)-binding domain"/> - <model ac="0045797" name="FAD/NAD(P)-binding domain"/> - <model ac="0054078" name="FAD/NAD(P)-binding domain"/> - <model ac="0040035" name="FAD/NAD(P)-binding domain"/> - <model ac="0053967" name="FAD/NAD(P)-binding domain"/> - <model ac="0049679" name="FAD/NAD(P)-binding domain"/> - </models> - <signature-library-release library="SUPERFAMILY" version="1.75"/> - </signature> - <locations> - <superfamilyhmmer3-location start="361" end="415"/> - <superfamilyhmmer3-location start="2" end="250"/> - </locations> - </superfamilyhmmer3-match> - <superfamilyhmmer3-match evalue="3.01E-46"> - <signature ac="SSF46977" - name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"> - <entry ac="IPR015939" - desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" - name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - </entry> - <models> - <model ac="0035988" - name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> - <model ac="0048345" - name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> - <model ac="0052031" - name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> - <model ac="0040048" - name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> - <model ac="0039663" - name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> - </models> - <signature-library-release library="SUPERFAMILY" version="1.75"/> - </signature> - <locations> - <superfamilyhmmer3-location start="444" end="590"/> - </locations> - </superfamilyhmmer3-match> - <superfamilyhmmer3-match evalue="6.88E-43"> - <signature ac="SSF56425" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"> - <entry ac="IPR027477" - desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" - name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> - <models> - <model ac="0039665" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0052033" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0036733" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0036265" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0040050" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0035990" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0041342" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - <model ac="0042899" - name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> - </models> - <signature-library-release library="SUPERFAMILY" version="1.75"/> - </signature> - <locations> - <superfamilyhmmer3-location start="227" end="358"/> - </locations> - </superfamilyhmmer3-match> - </matches> - </protein> - <protein> - <sequence md5="abfa044baa298f169ea62ac6b48e1185">MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES</sequence> - <xref desc="SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1" - db="sp" id="C1P5Z7" name="Putative inhibitor of glucose uptake transporter SgrT"/> - <matches> - <hmmer3-match evalue="8.8E-12" score="44.3"> - <signature ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"> - <entry ac="IPR031767" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT" type="FAMILY"> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0046325" - name="negative regulation of glucose import"/> - </entry> - <models> - <model ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"/> - </models> - <signature-library-release library="PFAM" version="28.0"/> - </signature> - <locations> - <hmmer3-location env-end="41" env-start="1" score="44.0" evalue="1.0E-11" hmm-start="2" hmm-end="39" - hmm-length="0" start="2" end="37"/> - </locations> - </hmmer3-match> - </matches> - </protein> - <protein> - <sequence md5="9ec8e26fcf5c160f533bf9a69dec0212">MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI</sequence> - <xref desc="DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1" - db="sp" id="P00370" name="NADP-specific glutamate dehydrogenase"/> - <matches> - <fingerprints-match evalue="2.5E-33" graphscan="IIII"> - <signature ac="PR00082" desc="Glutamate/leucine/phenylalanine/valine dehydrogenase signature" - name="GLFDHDRGNASE"> - <entry ac="IPR006095" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase" - name="Glu/Leu/Phe/Val_DH" type="FAMILY"> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" - name="cellular amino acid metabolic process"/> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - </entry> - <models> - <model ac="PR00082" desc="Glutamate/leucine/phenylalanine/valine dehydrogenase signature" - name="GLFDHDRGNASE"/> - </models> - <signature-library-release library="PRINTS" version="42.0"/> - </signature> - <locations> - <fingerprints-location motifNumber="4" pvalue="1.31E-6" score="64.64" start="372" end="383"/> - <fingerprints-location motifNumber="1" pvalue="3.9E-10" score="63.43" start="114" end="128"/> - <fingerprints-location motifNumber="3" pvalue="6.51E-10" score="43.54" start="235" end="255"/> - <fingerprints-location motifNumber="2" pvalue="6.22E-15" score="57.39" start="193" end="215"/> - </locations> - </fingerprints-match> - <hmmer2-match evalue="2.0E-93" score="326.3"> - <signature ac="SM00839" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" - name="ELFV_dehydrog"> - <entry ac="IPR006096" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal" - name="Glu/Leu/Phe/Val_DH_C" type="DOMAIN"> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" - name="cellular amino acid metabolic process"/> - </entry> - <models> - <model ac="SM00839" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" - name="ELFV_dehydrog"/> - </models> - <signature-library-release library="SMART" version="6.2"/> - </signature> - <locations> - <hmmer2-location score="326.3" evalue="2.0E-93" hmm-start="1" hmm-end="265" hmm-length="0" - start="204" end="445"/> - </locations> - </hmmer2-match> - <hmmer3-match evalue="3.9E-61" score="204.1"> - <signature ac="G3DSA:3.40.192.10"> - <models> - <model ac="1vi2A01"/> - <model ac="2hk9A01"/> - <model ac="2d5cA01"/> - <model ac="1c1dA01"/> - <model ac="1gtmA01"/> - <model ac="3o8qA01"/> - <model ac="1lehA01"/> - <model ac="3donA01"/> - <model ac="1a4iA02"/> - <model ac="1bgvA02"/> - <model ac="1edzA02"/> - <model ac="1npyA01"/> - <model ac="1p77A01"/> - </models> - <signature-library-release library="GENE3D" version="3.5.0"/> - </signature> - <locations> - <hmmer3-location env-end="190" env-start="55" score="202.7" evalue="1.0E-60" hmm-start="2" - hmm-end="134" hmm-length="0" start="68" end="188"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="9.5E-88" score="293.6"> - <signature ac="PF00208" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" - name="ELFV_dehydrog"> - <entry ac="IPR006096" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal" - name="Glu/Leu/Phe/Val_DH_C" type="DOMAIN"> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" - name="cellular amino acid metabolic process"/> - </entry> - <models> - <model ac="PF00208" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" - name="ELFV_dehydrog"/> - </models> - <signature-library-release library="PFAM" version="28.0"/> - </signature> - <locations> - <hmmer3-location env-end="445" env-start="202" score="293.2" evalue="1.3E-87" hmm-start="1" - hmm-end="243" hmm-length="0" start="202" end="445"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="1.6E-114" score="380.5"> - <signature ac="PIRSF000185" name="Glu_DH"> - <entry ac="IPR014362" desc="Glutamate dehydrogenase" name="Glu_DH" type="FAMILY"> - <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" - name="oxidation-reduction process"/> - <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016639" - name="oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor"/> - </entry> - <models> - <model ac="PIRSF000185" name="Glu_DH"/> - </models> - <signature-library-release library="PIRSF" version="3.01"/> - </signature> - <locations> - <hmmer3-location env-end="447" env-start="22" score="380.3" evalue="1.8E-114" hmm-start="23" - hmm-end="446" hmm-length="0" start="22" end="447"/> - </locations> - </hmmer3-match> - <hmmer3-match evalue="1.1E-63" score="213.8"> - <signature ac="G3DSA:3.40.50.720"> - <entry ac="IPR016040" desc="NAD(P)-binding domain" name="NAD(P)-bd_dom" type="DOMAIN"/> - 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<model ac="0054551" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0041099" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0052328" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0042306" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0048756" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0045524" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0054910" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0052564" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0040515" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0054098" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0053659" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0051796" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0050268" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0044958" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0037218" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0038855" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - <model ac="0037318" name="6-phosphogluconate dehydrogenase C-terminal domain-like"/> - </models> - <signature-library-release library="SUPERFAMILY" version="1.75"/> - </signature> - <locations> - <superfamilyhmmer3-location start="177" end="467"/> - </locations> - </superfamilyhmmer3-match> - </matches> - </protein> -</protein-matches>
--- a/interproscan5/data/input.fasta Fri Jan 29 18:41:29 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,32 +0,0 @@ ->sp|C1P5Z7|SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1 -MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES ->sp|P00350|6PGD_ECOLI 6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2 -MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF -VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF -NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH -YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT -KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS -KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIF -RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT -FSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD ->sp|P00363|FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3 -MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH -DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM -KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT -LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS -GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR -KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG -GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN -GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL -AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC -TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA -NG ->sp|P00370|DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1 -MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV -IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT -TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA -GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS -GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF -GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ -QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG -EQTNYVQGANIAGFVKVADAMLAQGVI
--- a/interproscan5/fake_ips.py Fri Jan 29 18:41:29 2016 -0500 +++ b/interproscan5/fake_ips.py Tue Feb 02 12:27:19 2016 -0500 @@ -13,7 +13,7 @@ parser.add_argument('-dp', action='store_true') parser.add_argument('--input') - parser.add_argument('--seqtype') + parser.add_argument('--seqtype', default='p') parser.add_argument('-f', dest='formats', default='tsv') parser.add_argument('--applications') parser.add_argument('--tempdir') @@ -27,7 +27,7 @@ args = parser.parse_args() formats = args.formats.split(',') - src_data_dir = os.path.dirname(__file__) + '/data' + src_data_dir = os.path.dirname(__file__) + '/data-' + args.seqtype for ext in formats: if ext in ['html', 'svg']:
--- a/interproscan5/ips5.xml Fri Jan 29 18:41:29 2016 -0500 +++ b/interproscan5/ips5.xml Tue Feb 02 12:27:19 2016 -0500 @@ -1,4 +1,4 @@ -<tool id="ips5" name="Interproscan functional predictions of ORFs" version="5.0.0mkh"> +<tool id="ips5" name="Interproscan functional predictions of ORFs" version="5.0.1mkh"> <description>Interproscan functional predictions of ORFs.</description> <requirements> <!-- @@ -27,9 +27,7 @@ --output-file-base __base__ 2>&1; - #if 'tsv' in str($output_types): - mv __base__.tsv $tsv_file; - #end if + mv __base__.tsv $tsv_file; #if 'gff3' in str($output_types): mv __base__.gff3 $gff3_file; @@ -43,7 +41,11 @@ mkdir -p $html_file.files_path; #set temp_archive_file = '__base__.html.tar.gz' tar -C $html_file.files_path -xvmzf $temp_archive_file; - python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_index.py $html_file $html_file.files_path; + #if str($seqtype) == 'p' and not str($getorfed): + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 0 $tsv_file $html_file $html_file.files_path; + #else + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 1 $tsv_file $html_file $html_file.files_path; + #end if rm $temp_archive_file; #end if @@ -51,7 +53,11 @@ mkdir -p $svg_file.files_path; #set temp_archive_file = '__base__.svg.tar.gz' tar -C $svg_file.files_path -xvmzf $temp_archive_file; - python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_index.py $svg_file $svg_file.files_path; + #if str($seqtype) == 'p' and not str($getorfed): + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 0 $tsv_file $svg_file $svg_file.files_path; + #else + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 1 $tsv_file $svg_file $svg_file.files_path; + #end if rm $temp_archive_file; #end if @@ -66,6 +72,10 @@ <option value="n">DNA / RNA</option> </param> + <param name="getorfed" type="boolean" label="DNA/RNA was externally processed by getorf?" help="Ignored for DNA inputs." + truevalue="getorfed" + falsevalue=""/> + <param name="mode" type="boolean" label="Run on cluster?" help="Check to submit job to cluster." truevalue="--mode=cluster --clusterrunid=gtdi-ips-analysis" falsevalue=""/> @@ -108,9 +118,8 @@ label="Provide additional mappings" help="Provide mappings from matched member database signatures to the InterPro entries that they are integrated into (--iprlookup)"/> - <param name="output_types" type="select" display="checkboxes" multiple="true" label="Output formats" + <param name="output_types" type="select" display="checkboxes" multiple="true" label="Output formats (in addition to TSV)" help="Select the output formats to generate (at least one)"> - <option value="tsv" selected="true">Raw (TSV)</option> <option value="html" selected="true">HTML (Graphical)</option> <option value="svg" selected="false">SVG (Scalable Vector Graphics)</option> <option value="gff3" selected="true">GFF3</option> @@ -119,9 +128,7 @@ </inputs> <outputs> - <data format="tabular" name="tsv_file" label="Interproscan TSV on ${on_string}"> - <filter>'tsv' in output_types</filter> - </data> + <data format="tabular" name="tsv_file" label="Interproscan TSV on ${on_string}"/> <data format="html" name="html_file" label="Interproscan HTML on ${on_string}"> <filter>'html' in output_types</filter> </data>
--- a/interproscan5/ipsfaux.xml Fri Jan 29 18:41:29 2016 -0500 +++ b/interproscan5/ipsfaux.xml Tue Feb 02 12:27:19 2016 -0500 @@ -1,4 +1,4 @@ -<tool id="ipsfaux" name="Faux Interproscan" version="1.0.0a"> +<tool id="ipsfaux" name="Faux Interproscan" version="1.0.1a"> <description>Interproscan functional predictions of ORFs (faux). Input file and computation options are ignored (other than the types of outputs). The same precomputed results are produced every time.</description> <requirements> @@ -12,8 +12,7 @@ <command> #import os - echo "output_types=$output_types"; - + echo "Start timestamp: \$(date)"; python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/fake_ips.py ## disables the precalculated lookup service, all calculation will be run locally -dp @@ -21,7 +20,6 @@ --seqtype $seqtype -f $output_types --applications $appl - --tempdir \$TEMP $pathways $goterms @@ -30,9 +28,7 @@ --output-file-base __base__ 2>&1; - #if 'tsv' in str($output_types): - mv __base__.tsv $tsv_file; - #end if + mv __base__.tsv $tsv_file; #if 'gff3' in str($output_types): mv __base__.gff3 $gff3_file; @@ -46,7 +42,11 @@ mkdir -p $html_file.files_path; #set temp_archive_file = '__base__.html.tar.gz' tar -C $html_file.files_path -xvmzf $temp_archive_file; - python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_index.py $html_file $html_file.files_path; + #if str($seqtype) == 'p' and not str($getorfed): + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 0 $tsv_file $html_file $html_file.files_path; + #else + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 1 $tsv_file $html_file $html_file.files_path; + #end if rm $temp_archive_file; #end if @@ -54,11 +54,15 @@ mkdir -p $svg_file.files_path; #set temp_archive_file = '__base__.svg.tar.gz' tar -C $svg_file.files_path -xvmzf $temp_archive_file; - python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_index.py $svg_file $svg_file.files_path; + #if str($seqtype) == 'p' and not str($getorfed): + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 0 $tsv_file $svg_file $svg_file.files_path; + #else + python \$INTERPROSCAN_SCRIPT_PATH/interproscan5/create_html_index.py 1 $tsv_file $svg_file $svg_file.files_path; + #end if rm $temp_archive_file; #end if - echo "End of ipsfaux" + echo "End timestamp: \$(date)" </command> <inputs> @@ -69,6 +73,10 @@ <option value="n">DNA / RNA</option> </param> + <param name="getorfed" type="boolean" label="DNA/RNA was externally processed by getorf?" help="Ignored for DNA inputs." + truevalue="getorfed" + falsevalue=""/> + <param name="mode" type="boolean" label="Run on cluster?" help="Check to submit job to cluster." truevalue="--mode=cluster --clusterrunid=gtdi-ips-analysis" falsevalue=""/> @@ -111,9 +119,8 @@ label="Provide additional mappings" help="Provide mappings from matched member database signatures to the InterPro entries that they are integrated into (--iprlookup)"/> - <param name="output_types" type="select" display="checkboxes" multiple="true" label="Output formats" + <param name="output_types" type="select" display="checkboxes" multiple="true" label="Output formats (in addition to TSV)" help="Select the output formats to generate (at least one)"> - <option value="tsv" selected="true">Raw (TSV)</option> <option value="html" selected="true">HTML (Graphical)</option> <option value="svg" selected="false">SVG (Scalable Vector Graphics)</option> <option value="gff3" selected="true">GFF3</option> @@ -122,9 +129,7 @@ </inputs> <outputs> - <data format="tabular" name="tsv_file" label="Interproscan TSV on ${on_string}"> - <filter>'tsv' in output_types</filter> - </data> + <data format="tabular" name="tsv_file" label="Interproscan TSV on ${on_string}"/> <data format="html" name="html_file" label="Interproscan HTML on ${on_string}"> <filter>'html' in output_types</filter> </data>