Mercurial > repos > mkh > ips5

changeset 1:e2d4343d73ad draft

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Minor fixes.
author mkh
date Fri, 29 Jan 2016 18:07:17 -0500
parents fe8e43a26870
children d1d34608dba0
files interproscan5/ips5.xml interproscan5/ipsfaux.xml
diffstat 2 files changed, 4 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/interproscan5/ips5.xml	Thu Jan 28 19:34:51 2016 -0500
+++ b/interproscan5/ips5.xml	Fri Jan 29 18:07:17 2016 -0500
@@ -11,7 +11,7 @@
 
     <command>
         #import os
-
+        echo "Start timestamp: $(date)";
         \$IPS_HOME/interproscan.sh
             ## disables the precalculated lookup service, all calculation will be run locally
             -dp
@@ -19,7 +19,6 @@
             --seqtype $seqtype
             -f $output_types
             --applications $appl
-            --tempdir \$TEMP
 
             $pathways
             $goterms
@@ -56,11 +55,11 @@
             rm $temp_archive_file;
         #end if
 
-        echo "End of ipsfaux"
+        echo "End timestamp: $(date)"
     </command>
 
     <inputs>
-        <param name="infile" type="data" format="fasta" label="Sequence Fasta File (ignored -- faux mode)"/>
+        <param name="infile" type="data" format="fasta" label="Sequence Fasta File"/>
 
         <param name="seqtype" type="select" label="Type of the input sequences" help="">
             <option value="p" selected="true">Protein</option>
--- a/interproscan5/ipsfaux.xml	Thu Jan 28 19:34:51 2016 -0500
+++ b/interproscan5/ipsfaux.xml	Fri Jan 29 18:07:17 2016 -0500
@@ -1,4 +1,4 @@
-<tool id="ipsfaux" name="Interproscan functional predictions of ORFs (faux)" version="1.0.0a">
+<tool id="ipsfaux" name="Faux Interproscan" version="1.0.0a">
     <description>Interproscan functional predictions of ORFs (faux). Input file and computation options are
     ignored (other than the types of outputs). The same precomputed results are produced every time.</description>
     <requirements>