# HG changeset patch
# User mkhan1980
# Date 1366903208 14400
# Node ID 1c09a4a564596a14db30307276285b09be1fe3f6
# Parent  c30f1e611791fbcdb092dd1a2da20b9dc6162f8a
Uploaded

diff -r c30f1e611791 -r 1c09a4a56459 check.pl
--- a/check.pl	Mon Mar 04 07:01:24 2013 -0500
+++ b/check.pl	Thu Apr 25 11:20:08 2013 -0400
@@ -106,7 +106,7 @@
 
 # Define the pattern for CTCF. Because of pseudocount, a wildcard is allowed at 
 #each position. 
-  	  		my $pattern = "[ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC]";
+  	  		my $pattern = "[ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN]";
 	   
 # Compare the pattern with the 19 bp nucleotide segments.