diff GALAXY_FILES/tools/EMBER/Make_Logo.xml @ 3:037c3edda16e

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GALAXY_FILES/tools/EMBER/Make_Logo.xml	Thu Mar 22 13:49:52 2012 -0400
@@ -0,0 +1,41 @@
+<tool id="make_logo" name="Make Logo" version="1.3.1">
+  <description>Post-processing analysis: makes a visual representation of the EMBER expression pattern</description>
+  <command interpreter="perl">Make_Logo_Galaxy.pl -m $model -c $compslist -o $output</command>
+  <inputs>
+    <param format="txt" name="model" type="data" label="Model file"/>
+    <param format="txt" name="compslist" type="data" label="Comparison list"/>
+  </inputs>
+  <outputs>
+    <data format="eps" name="output"/>
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="model" value="EMBER/patterns-1.model"/>
+      <param name="compslist" value="EMBER/comparisons_list.txt"/>
+      <output name="output">
+        <assert_contents>
+          <has_text text="%%Title:" />
+        </assert_contents>
+      </output>
+    </test>
+  </tests>
+
+  <help>
+
+This tool makes an eps file representing the expression pattern from EMBER.
+
+-----
+
+Description of inputs:
+
+*Model file*: the .model output EMBER (first line is "comparison/class; avg...")
+
+*Comparison list*: the same comparison list input to PreProcess Expression Data (used to make plot labels).
+
+NOTE: if you are running a local installation of Galaxy, you must have gnuplot installed to run Make Logo. Gnuplot is free and can be downloaded at http://www.gnuplot.info/. After downloading the package, follow the instructions in the INSTALL file.
+
+  </help>
+
+</tool>
+