annotate README.rst @ 12:961089e21ae2 draft default tip

planemo upload commit 1a5357c0e28103a0325b2df858504721f6266049
author lecorguille
date Tue, 09 Oct 2018 06:03:24 -0400
parents 479a83f62863
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
1
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
2 Changelog/News
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
3 --------------
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
4
10
479a83f62863 planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 9
diff changeset
5 **Version 2.2.2 - 01/03/2018**
479a83f62863 planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 9
diff changeset
6
479a83f62863 planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 9
diff changeset
7 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0
479a83f62863 planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 9
diff changeset
8
479a83f62863 planemo upload commit 98f8d5d3e1a4356b411f16644ffa4da444ac2bdb
lecorguille
parents: 9
diff changeset
9
9
a3024f51082d planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 8
diff changeset
10 **Version 2.0.7 - 29/11/2017**
a3024f51082d planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 8
diff changeset
11
a3024f51082d planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 8
diff changeset
12 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
a3024f51082d planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 8
diff changeset
13
a3024f51082d planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 8
diff changeset
14
8
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
15 **Version 2.0.6 - 10/02/2017**
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
16
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
17 - IMPROVEMENT: Synchronize the variableMetadata export option with the other tools (xcms.group, xcms.fillpeaks, camera.annotate)
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
18
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
19
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
20 **Version 2.0.5 - 22/12/2016**
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
21
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
22 - IMPROVEMENT: add the possibility to add a personal Matrix of matching rules (ruleset)
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
23
198b035d4848 planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419
lecorguille
parents: 4
diff changeset
24
4
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
25 **Version 2.0.4 - 21/04/2016**
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
26
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
27 - UPGRADE: upgrate the CAMERA version from 1.22.0 to 1.26.0
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
28
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
29
3
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
30 **Version 2.0.3 - 10/02/2016**
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
31
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
32 - BUGFIX: better management of errors. Datasets remained green although the process failed
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
33
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
34 - UPDATE: refactoring of internal management of inputs/outputs
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
35
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
36
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
37 **Version 2.0.1 - 07/06/2015**
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
38
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
39 - IMPROVEMENT: new datatype/dataset formats (rdata.camera.positive, rdata.camera.negative, rdata.camera.quick ...) will facilitate the sequence of tools and so avoid incompatibility errors.
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
40
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
41 - IMPROVEMENT: parameter labels have changed to facilitate their reading.
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
42
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
43
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
44 **Version 2.0.0 - 09/06/2015**
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
45
9
a3024f51082d planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
lecorguille
parents: 8
diff changeset
46 - NEW: combinexsAnnos Check CAMERA ion species annotation due to matching with opposite ion mode
3
4ca5c7bbc6cf planemo upload
lecorguille
parents:
diff changeset
47
4
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
48
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
49 Test Status
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
50 -----------
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
51
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
52 Planemo test using conda: passed
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
53
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
54 Planemo test using source env.sh: passed
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
55
87570e9b71f5 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents: 3
diff changeset
56 Planemo shed_test : passed