Mercurial > repos > mmonsoor > camera_combinexsannos
annotate macros.xml @ 6:ed26298f0246 draft
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author | lecorguille |
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date | Mon, 04 Jul 2016 11:57:19 -0400 |
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1 <?xml version="1.0"?> |
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2 <macros> |
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3 <xml name="requirements"> |
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4 <requirements> |
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5 <requirement type="package" version="3.1.2">R</requirement> |
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6 <requirement type="package" version="0.4_1">r-snow</requirement> |
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7 <requirement type="package" version="1.26.0">bioconductor-camera</requirement> |
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8 <requirement type="package" version="2.26.0">bioconductor-multtest</requirement> |
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9 <requirement type="package" version="1.1_4">r-batch</requirement> |
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10 <requirement type="package" version="1.6.17">libpng</requirement> |
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11 <requirement type="package" version="1.3.20">graphicsmagick</requirement> |
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12 </requirements> |
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13 </xml> |
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14 <xml name="stdio"> |
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15 <stdio> |
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16 <exit_code range="1" level="fatal" /> |
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17 </stdio> |
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18 </xml> |
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19 |
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20 <token name="@COMMAND_CAMERA_SCRIPT@"> |
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21 LANG=C Rscript $__tool_directory__/CAMERA.r |
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22 </token> |
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23 |
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24 <!-- zipfile load for planemo test --> |
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25 <token name="@COMMAND_ZIPFILE_LOAD@"> |
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26 #if $zipfile_load_conditional.zipfile_load_select == "yes": |
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27 #if $zipfile_load_conditional.zip_file: |
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28 zipfile $zipfile_load_conditional.zip_file |
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29 #end if |
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30 #end if |
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31 </token> |
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32 <xml name="zipfile_load"> |
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33 <conditional name="zipfile_load_conditional"> |
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34 <param name="zipfile_load_select" type="select" label="Resubmit your zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." > |
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35 <option value="no" >no need</option> |
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36 <option value="yes" selected="peakgroups">yes</option> |
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37 </param> |
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38 <when value="no"> |
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39 </when> |
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40 <when value="yes"> |
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41 <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" /> |
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42 </when> |
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43 </conditional> |
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44 </xml> |
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45 |
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46 <token name="@HELP_AUTHORS@"> |
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47 .. class:: infomark |
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48 |
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49 **Authors** Colin A. Smith csmith@scripps.edu, Ralf Tautenhahn rtautenh@gmail.com, Steffen Neumann sneumann@ipb-halle.de, Paul Benton hpaul.benton08@imperial.ac.uk and Christopher Conley cjconley@ucdavis.edu |
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50 |
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51 .. class:: infomark |
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52 |
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53 **Galaxy integration** ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff and Yann Guitton yann.guitton@oniris-nantes.fr - part of Workflow4Metabolomics.org [W4M] |
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54 |
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55 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. |
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56 |
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57 --------------------------------------------------- |
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58 |
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59 </token> |
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60 |
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61 |
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62 <xml name="citation"> |
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63 <citations> |
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64 <citation type="doi">10.1021/ac202450g</citation> |
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65 <citation type="doi">10.1093/bioinformatics/btu813</citation> |
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66 </citations> |
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67 </xml> |
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68 </macros> |