Mercurial > repos > mmonsoor > camera_combinexsannos
diff abims_CAMERA_combinexsAnnos.xml @ 4:87570e9b71f5 draft
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 11:07:23 -0400 |
| parents | 4ca5c7bbc6cf |
| children | 198b035d4848 |
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--- a/abims_CAMERA_combinexsAnnos.xml Mon Feb 22 16:49:04 2016 -0500 +++ b/abims_CAMERA_combinexsAnnos.xml Mon Apr 25 11:07:23 2016 -0400 @@ -1,21 +1,16 @@ -<tool id="abims_CAMERA_combinexsAnnos" name="CAMERA.combinexsAnnos" version="2.0.3"> +<tool id="abims_CAMERA_combinexsAnnos" name="CAMERA.combinexsAnnos" version="2.0.4"> <description>Wrapper function for the combinexsAnnos CAMERA function. Returns a dataframe with recalculated annotations.</description> - <requirements> - <requirement type="package" version="3.1.2">R</requirement> - <requirement type="binary">Rscript</requirement> - <requirement type="package" version="1.44.0">xcms</requirement> - <requirement type="package" version="1.22.0">camera</requirement> - <requirement type="package" version="2.2.0">camera_w4m_script</requirement> - </requirements> + <macros> + <import>macros.xml</import> + </macros> - <stdio> - <exit_code range="1:" level="fatal" /> - </stdio> + <expand macro="requirements"/> + <expand macro="stdio"/> <command><![CDATA[ - CAMERA.r + @COMMAND_CAMERA_SCRIPT@ xfunction combinexsAnnos image_pos $image_pos image_neg $image_neg @@ -52,31 +47,19 @@ <tests> <test> <!-- TODO: generer des vrais dataset pos et neg--> - <param name="image_pos" value="xset.group.retcor.group.fillPeaks.annotate.positive.Rdata"/> - <param name="image_neg" value="xset.group.retcor.group.fillPeaks.annotate.negative.Rdata"/> + <param name="image_pos" value="faahOK.xset.group.retcor.group.fillPeaks.annotate.positive.Rdata"/> + <param name="image_neg" value="faahOK.xset.group.retcor.group.fillPeaks.annotate.negative.Rdata"/> <param name="pos" value="TRUE"/> <param name="tol" value="2"/> <param name="ruleset" value="1,1"/> - <output name="variableMetadata" file="xset.group.retcor.group.fillPeaks.annotate.positive.combinexsAnnos.variableMetadata.tsv" /> + <output name="variableMetadata" file="faahOK.xset.group.retcor.group.fillPeaks.annotate.positive.combinexsAnnos.variableMetadata.tsv" /> </test> </tests> <help><![CDATA[ - -.. class:: infomark - -**Authors** Carsten Kuhl ckuhl@ipb-halle.de, Ralf Tautenhahn rtautenh@scripps.edu, Steffen Neumann sneumann@@ipb-halle.de - -.. class:: infomark - -**Galaxy integration** ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff and Yann Guitton yann.guitton@univ-nantes.fr - part of Workflow4Metabolomics.org [W4M] - - | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. - ---------------------------------------------------- - - + +@HELP_AUTHORS@ ======================= Xcms.combinexsAnnos @@ -209,6 +192,11 @@ Changelog/News -------------- +**Version 2.0.4 - 21/04/2016** + +- UPGRADE: upgrate the CAMERA version from 1.22.0 to 1.26.0 + + **Version 2.0.3 - 10/02/2016** - BUGFIX: better management of errors. Datasets remained green although the process failed @@ -230,10 +218,7 @@ ]]></help> - <citations> - <citation type="doi"> 10.1021/ac202450g</citation> - <citation type="doi">10.1093/bioinformatics/btu813</citation> - </citations> + <expand macro="citation" /> </tool>