Mercurial > repos > mmonsoor > camera_combinexsannos
diff CAMERA.r @ 12:961089e21ae2 draft default tip
planemo upload commit 1a5357c0e28103a0325b2df858504721f6266049
| author | lecorguille |
|---|---|
| date | Tue, 09 Oct 2018 06:03:24 -0400 |
| parents | 837c6955e4e9 |
| children |
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--- a/CAMERA.r Wed Sep 19 03:22:42 2018 -0400 +++ b/CAMERA.r Tue Oct 09 06:03:24 2018 -0400 @@ -83,11 +83,6 @@ rplotspdf = listArguments[["rplotspdf"]]; listArguments[["rplotspdf"]]=NULL } -dataMatrixOutput = "dataMatrix.tsv" -if (!is.null(listArguments[["dataMatrixOutput"]])){ - dataMatrixOutput = listArguments[["dataMatrixOutput"]]; listArguments[["dataMatrixOutput"]]=NULL -} - variableMetadataOutput = "variableMetadata.tsv" if (!is.null(listArguments[["variableMetadataOutput"]])){ variableMetadataOutput = listArguments[["variableMetadataOutput"]]; listArguments[["variableMetadataOutput"]]=NULL @@ -129,7 +124,7 @@ pdf(file=rplotspdf, width=16, height=12) if (thefunction %in% c("annotatediff")) { - results_list=annotatediff(xset=xset,listArguments=listArguments,variableMetadataOutput=variableMetadataOutput,dataMatrixOutput=dataMatrixOutput) + results_list=annotatediff(xset=xset,listArguments=listArguments,variableMetadataOutput=variableMetadataOutput) xa=results_list[["xa"]] diffrep=results_list[["diffrep"]] variableMetadata=results_list[["variableMetadata"]]