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view mmseq.sh @ 6:feda458ea8c5

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Uploaded mmseq analysis pipeline xml file
author mmseq
date Mon, 15 Aug 2011 12:00:16 -0400
parents 4a253e6e134a
children
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#!/bin/bash

TEMP=bam.hits
bam2hits $1 $2 > $TEMP 2> /dev/null
mmseq $TEMP output > /dev/null
mv output.mmseq $3
mv output.gene.mmseq $4
mv output.amalgamated.mmseq $5