# HG changeset patch
# User mmseq
# Date 1313423428 14400
# Node ID 4a253e6e134aa8d78ca5c3f1b227fb0ece117e73

Uploaded mmseq pipeline analysis tool

diff -r 000000000000 -r 4a253e6e134a mmseq.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mmseq.sh	Mon Aug 15 11:50:28 2011 -0400
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+TEMP=bam.hits
+bam2hits $1 $2 > $TEMP 2> /dev/null
+mmseq $TEMP output > /dev/null
+mv output.mmseq $3
+mv output.gene.mmseq $4
+mv output.amalgamated.mmseq $5