Mercurial > repos > mmseq > mmseq
changeset 7:227e5fcd9200
Deleted selected files
author | mmseq |
---|---|
date | Mon, 15 Aug 2011 14:09:36 -0400 |
parents | feda458ea8c5 |
children | 2dffdc276fd8 |
files | mmseq.xml |
diffstat | 1 files changed, 0 insertions(+), 32 deletions(-) [+] |
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--- a/mmseq.xml Mon Aug 15 12:00:16 2011 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,32 +0,0 @@ -<tool id="mmseq" name="MMSEQ"> - <description>Estimation of transcript expression</description> - <command interpreter="bash">mmseq.sh $input1 $input2 $output1 $output2 $output3</command> - <inputs> - <param format="fasta" name="input1" type="data" label="Reference genome"/> - <param format="bam" name="input2" type="data" label="Sorted bam file"/> - </inputs> - <outputs> - <data format="tabular" name="output1"/> - <data format="tabular" name="output2"/> - <data format="tabular" name="output3"/> - </outputs> - <help> - -**About MMSEQ** - -MMSEQ_ is a novel RNA seq analysis method for estimating haplotype, isoform and gene specific expression. - -.. _MMSEQ: http://www.bgx.org.uk/software/mmseq.html - --------- - -**Input formats**:: - -MMSEQ accepts sorted BAM file as input. The SAM files obtained as a result of Bowtie alignment can be converted to BAM files and sorted using the SAMTools. - --------- - -**Outputs**:: - - </help> -</tool>