changeset 0:4a253e6e134a

Uploaded mmseq pipeline analysis tool
author mmseq
date Mon, 15 Aug 2011 11:50:28 -0400
parents
children 8429299dfc9a
files mmseq.sh
diffstat 1 files changed, 8 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mmseq.sh	Mon Aug 15 11:50:28 2011 -0400
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+TEMP=bam.hits
+bam2hits $1 $2 > $TEMP 2> /dev/null
+mmseq $TEMP output > /dev/null
+mv output.mmseq $3
+mv output.gene.mmseq $4
+mv output.amalgamated.mmseq $5