Mercurial > repos > mnhn65mo > regionalgam
annotate flight_curve.R @ 0:5b126f770671 draft
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| author | mnhn65mo |
|---|---|
| date | Fri, 03 Aug 2018 08:28:22 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env Rscript |
| 2 #library('getopt') | |
| 3 #library(devtools) | |
| 4 | |
| 5 args = commandArgs(trailingOnly=TRUE) | |
| 6 source(args[1]) #TODO replace by library(regionalGAM) if available as official package from bioconda | |
| 7 | |
| 8 tryCatch({input = read.table(args[2], header=TRUE,sep=" ")},finally={input = read.table(args[2], header=TRUE,sep=",")}) | |
| 9 dataset1 <- input[,c("SPECIES","SITE","YEAR","MONTH","DAY","COUNT")] | |
| 10 pheno <- flight_curve(dataset1) | |
| 11 | |
| 12 write.table(pheno, file="pheno", row.names=FALSE, sep=" ") |