comparison glmmpql.R @ 0:5b126f770671 draft

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author mnhn65mo
date Fri, 03 Aug 2018 08:28:22 -0400
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1 #!/usr/bin/env Rscript
2 library(nlme)
3 library(MASS)
4
5 args = commandArgs(trailingOnly=TRUE)
6 input = read.table(args[1], header=TRUE,sep=" ") #input=data.index =ab_index-output
7
8 glmm.mod_fullyear <- glmmPQL(regional_gam~ as.factor(YEAR)-1,data=input,family=quasipoisson,random=~1|SITE, correlation = corAR1(form = ~ YEAR | SITE),verbose = FALSE)
9
10 col.index <- as.numeric(glmm.mod_fullyear$coefficients$fixed)
11 year <- unique(input$YEAR)
12
13 write.table(col.index, file="output-glmmpql", row.names=FALSE, sep=" ")
14 #write.table(col.index, file="output-glmmpql", row.names=FALSE)
15
16 png('output-plot.png')
17 plot(year,col.index,type='o', xlab="year",ylab="collated index")
18 invisible(dev.off())