Mercurial > repos > mnhn65mo > regionalgam
comparison glmmpql.R @ 0:5b126f770671 draft
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author | mnhn65mo |
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date | Fri, 03 Aug 2018 08:28:22 -0400 |
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-1:000000000000 | 0:5b126f770671 |
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1 #!/usr/bin/env Rscript | |
2 library(nlme) | |
3 library(MASS) | |
4 | |
5 args = commandArgs(trailingOnly=TRUE) | |
6 input = read.table(args[1], header=TRUE,sep=" ") #input=data.index =ab_index-output | |
7 | |
8 glmm.mod_fullyear <- glmmPQL(regional_gam~ as.factor(YEAR)-1,data=input,family=quasipoisson,random=~1|SITE, correlation = corAR1(form = ~ YEAR | SITE),verbose = FALSE) | |
9 | |
10 col.index <- as.numeric(glmm.mod_fullyear$coefficients$fixed) | |
11 year <- unique(input$YEAR) | |
12 | |
13 write.table(col.index, file="output-glmmpql", row.names=FALSE, sep=" ") | |
14 #write.table(col.index, file="output-glmmpql", row.names=FALSE) | |
15 | |
16 png('output-plot.png') | |
17 plot(year,col.index,type='o', xlab="year",ylab="collated index") | |
18 invisible(dev.off()) |