Mercurial > repos > modencode-dcc > bamedit
comparison tool_dependencies.xml @ 14:feaf4d152d6b draft
Uploaded
| author | modencode-dcc |
|---|---|
| date | Mon, 21 Jan 2013 14:23:18 -0500 |
| parents | 3ff272201930 |
| children | eb166cebbe3c |
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| 13:1ceeba7b95a4 | 14:feaf4d152d6b |
|---|---|
| 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 5 </set_environment> | 5 </set_environment> |
| 6 <package name="samtools" version="0.1.12"> | 6 <package name="samtools" version="0.1.12"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tools/tool_shed_dependencies/bamedit/samtoolspkg.tar?raw=true</action> | 9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/bamedit/samtoolspkg.tar?raw=true</action> |
| 10 <action type="shell_command">chmod ago+x samtools</action> | 10 <action type="shell_command">chmod ago+x samtools</action> |
| 11 <action type="shell_command">chmod ago+x maq2sam-long</action> | 11 <action type="shell_command">chmod ago+x maq2sam-long</action> |
| 12 <action type="move_file"> | 12 <action type="move_file"> |
| 13 <source>samtools</source> | 13 <source>samtools</source> |
| 14 <destination>$INSTALL_DIR/bin</destination> | 14 <destination>$INSTALL_DIR/bin</destination> |