comparison idrPlotDef.xml @ 2:e7295ec4e750 draft

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author modencode-dcc
date Thu, 17 Jan 2013 15:45:03 -0500
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1:c6bfb8bcff93 2:e7295ec4e750
1 <!--
2 Usage of THIS SCRIPT: ./idrPlotWrapper.sh em uri outputfile
3 -->
4
5 <tool id="batch_consistency_plot" name="IDR-Plot">
6 <description>Plot Consistency Analysis on IDR output files</description>
7 <command interpreter="bash">idrPlotWrapper.sh $em $uri $outputfile</command>
8 <inputs>
9 <param name="uri" type="data" label="uri.sav file (output from IDR consistency analysis)"/>
10 <param name="em" type="data" label="em.sav file (output from IDR consistency analysis)"/>
11 </inputs>
12 <outputs>
13 <data format="pdf" name="outputfile" label="IDR-plot.pdf"/>
14 </outputs>
15
16 <tests>
17 <test>
18 <!--
19 <param name="input" value="fa_gc_content_input.fa"/>
20 <output name="out_file1" file="fa_gc_content_output.txt"/>
21 -->
22 </test>
23 </tests>
24
25 <help>
26 Plots the correspondence curve and IDR threshold (i.e. number of selected peaks vs IDR) for each pair of samples.
27 Uses the output of IDR consistency analysis and produces a downloadable PDF file containing the graphical analysis.
28 This is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr.
29 </help>
30
31 </tool>