comparison tool_dependencies.xml @ 16:14f378e35191 draft default tip

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author modencode-dcc
date Fri, 25 Jan 2013 11:49:55 -0500
parents 27b3fbd033d4
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15:27b3fbd033d4 16:14f378e35191
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!--<set_environment version="1.0">
4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment>-->
6 <package name="macs2" version="2.0.10.2"> 3 <package name="macs2" version="2.0.10.2">
7 <install version="1.0"> 4 <install version="1.0">
5 <!--<actions>
6 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action>
7 <action type="shell_command">./configure</action>
8 <action type="shell_command">make -j</action>
9 <action type="shell_command">sudo -n make install</action>
10 <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action>
11 <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action>
12 </actions>-->
8 <actions> 13 <actions>
9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/macs2/macs2pkg.tar?raw=true</action> 14 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action>
10 <action type="move_directory_files"> 15 <action type="move_directory_files">
11 <source_directory>bin</source_directory> 16 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR/bin</destination_directory> 17 <destination_directory>$INSTALL_DIR/bin</destination_directory>
13 </action> 18 </action>
14 <action type="move_directory_files"> 19 <action type="move_directory_files">
22 </actions> 27 </actions>
23 </install> 28 </install>
24 <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme> 29 <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme>
25 </package> 30 </package>
26 </tool_dependency> 31 </tool_dependency>
32
33 <!--<action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/numpy.tar</action>
34 <action type="shell_command">sudo -n python setup.py build</action>
35 <action type="shell_command">sudo -n python setup.py install</action>-->
36