Mercurial > repos > modencode-dcc > macs2
comparison tool_dependencies.xml @ 16:14f378e35191 draft default tip
Uploaded
| author | modencode-dcc |
|---|---|
| date | Fri, 25 Jan 2013 11:49:55 -0500 |
| parents | 27b3fbd033d4 |
| children |
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| 15:27b3fbd033d4 | 16:14f378e35191 |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <!--<set_environment version="1.0"> | |
| 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | |
| 5 </set_environment>--> | |
| 6 <package name="macs2" version="2.0.10.2"> | 3 <package name="macs2" version="2.0.10.2"> |
| 7 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <!--<actions> | |
| 6 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action> | |
| 7 <action type="shell_command">./configure</action> | |
| 8 <action type="shell_command">make -j</action> | |
| 9 <action type="shell_command">sudo -n make install</action> | |
| 10 <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action> | |
| 11 <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action> | |
| 12 </actions>--> | |
| 8 <actions> | 13 <actions> |
| 9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/macs2/macs2pkg.tar?raw=true</action> | 14 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action> |
| 10 <action type="move_directory_files"> | 15 <action type="move_directory_files"> |
| 11 <source_directory>bin</source_directory> | 16 <source_directory>bin</source_directory> |
| 12 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 17 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 13 </action> | 18 </action> |
| 14 <action type="move_directory_files"> | 19 <action type="move_directory_files"> |
| 22 </actions> | 27 </actions> |
| 23 </install> | 28 </install> |
| 24 <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme> | 29 <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme> |
| 25 </package> | 30 </package> |
| 26 </tool_dependency> | 31 </tool_dependency> |
| 32 | |
| 33 <!--<action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/numpy.tar</action> | |
| 34 <action type="shell_command">sudo -n python setup.py build</action> | |
| 35 <action type="shell_command">sudo -n python setup.py install</action>--> | |
| 36 |