Mercurial > repos > modencode-dcc > macs2
diff tool_dependencies.xml @ 16:14f378e35191 draft default tip
Uploaded
| author | modencode-dcc |
|---|---|
| date | Fri, 25 Jan 2013 11:49:55 -0500 |
| parents | 27b3fbd033d4 |
| children |
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--- a/tool_dependencies.xml Mon Jan 21 14:23:55 2013 -0500 +++ b/tool_dependencies.xml Fri Jan 25 11:49:55 2013 -0500 @@ -1,12 +1,17 @@ <?xml version="1.0"?> <tool_dependency> - <!--<set_environment version="1.0"> - <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> - </set_environment>--> <package name="macs2" version="2.0.10.2"> - <install version="1.0"> + <install version="1.0"> + <!--<actions> + <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action> + <action type="shell_command">./configure</action> + <action type="shell_command">make -j</action> + <action type="shell_command">sudo -n make install</action> + <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action> + <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action> + </actions>--> <actions> - <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/macs2/macs2pkg.tar?raw=true</action> + <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> @@ -24,3 +29,8 @@ <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme> </package> </tool_dependency> + +<!--<action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/numpy.tar</action> + <action type="shell_command">sudo -n python setup.py build</action> + <action type="shell_command">sudo -n python setup.py install</action>--> +