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<?xml version="1.0"?>
<tool_dependency>
    <package name="macs2" version="2.0.10.2">
        <install version="1.0">           
            <!--<actions>
                <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action>
                <action type="shell_command">./configure</action>
                <action type="shell_command">make -j</action>
                <action type="shell_command">sudo -n make install</action>
                <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action>
                <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action>
            </actions>-->
            <actions>
                <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>lib</source_directory>
                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme>
    </package>
</tool_dependency>

<!--<action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/numpy.tar</action>
                <action type="shell_command">sudo -n python setup.py build</action>
                <action type="shell_command">sudo -n python setup.py install</action>-->