Mercurial > repos > modencode-dcc > macs2

changeset 6:784f269a4c29 draft

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Uploaded
author modencode-dcc
date Fri, 18 Jan 2013 11:24:29 -0500
parents a188619e6a90
children 30aa94c21bb7
files tool_dependencies.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jan 18 11:24:29 2013 -0500
@@ -0,0 +1,26 @@
+ <?xml version="1.0"?>
+<tool_dependency>
+     3     <!--<set_environment version="1.0">
+     4         <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+     5     </set_environment>-->
+     <package name="macs2" version="2.0.10.2">
+         <install version="1.0">
+             <actions>
+                <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tools/tool_shed_dependencies/macs2/macs2pkg.tar?raw=true</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>lib</source_directory>
+                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
+                </action>
+                <action type="set_environment">
+                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                     <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme>
+    </package>
+</tool_dependency>