Mercurial > repos > modencode-dcc > macs2

changeset 16:14f378e35191 draft default tip

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Uploaded
author modencode-dcc
date Fri, 25 Jan 2013 11:49:55 -0500
parents 27b3fbd033d4
children
files tool_dependencies.xml
diffstat 1 files changed, 15 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jan 21 14:23:55 2013 -0500
+++ b/tool_dependencies.xml	Fri Jan 25 11:49:55 2013 -0500
@@ -1,12 +1,17 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <!--<set_environment version="1.0">
-        <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
-    </set_environment>-->
     <package name="macs2" version="2.0.10.2">
-        <install version="1.0">
+        <install version="1.0">           
+            <!--<actions>
+                <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action>
+                <action type="shell_command">./configure</action>
+                <action type="shell_command">make -j</action>
+                <action type="shell_command">sudo -n make install</action>
+                <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action>
+                <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action>
+            </actions>-->
             <actions>
-                <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/macs2/macs2pkg.tar?raw=true</action>
+                <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action>
                 <action type="move_directory_files">
                     <source_directory>bin</source_directory>
                     <destination_directory>$INSTALL_DIR/bin</destination_directory>
@@ -24,3 +29,8 @@
         <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme>
     </package>
 </tool_dependency>
+
+<!--<action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/numpy.tar</action>
+                <action type="shell_command">sudo -n python setup.py build</action>
+                <action type="shell_command">sudo -n python setup.py install</action>-->
+