Mercurial > repos > modencode-dcc > spp_package

comparison spp_wrapper.py @ 12:d063cc917090 draft

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author modencode-dcc
date Thu, 07 Feb 2013 23:42:12 -0500
parents c57381059179
children 64f2784d471f
comparison
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11:495a6d033ca1 12:d063cc917090
19 output_plot_file = sys.argv[6] 19 output_plot_file = sys.argv[6]
20 output_default_file = sys.argv[7] 20 output_default_file = sys.argv[7]
21 script_path = sys.argv[8] 21 script_path = sys.argv[8]
22 22
23 #set file extensions and set mandatory options 23 #set file extensions and set mandatory options
24 #======================================================================================== 24 #======================================================================================
25 experiment_name = '_'.join( options['experiment_name'].split() ) #save experiment name 25 experiment_name = '_'.join( options['experiment_name'].split() ) #save experiment name
26 26
27 chip_file = "%s.bam" % (options['chip_file']) 27 chip_file = "%s.bam" % (options['chip_file'])
28 subprocess.call(["cp", options['chip_file'], chip_file]) 28 subprocess.call(["cp", options['chip_file'], chip_file])
29 29