Mercurial > repos > modencode-dcc > spp_package

comparison spp_wrapper.py @ 9:dfdaa943f855 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
corrected created file path
author modencode-dcc
date Wed, 06 Feb 2013 21:23:05 -0500
parents 2db63ab9b129
children c57381059179
comparison
equal deleted inserted replaced
8:2db63ab9b129 9:dfdaa943f855
70 if os.path.exists( created_default_file ): 70 if os.path.exists( created_default_file ):
71 shutil.move( created_default_file, output_default_file ) 71 shutil.move( created_default_file, output_default_file )
72 72
73 chip_name = os.path.basename(options['chip_file']) 73 chip_name = os.path.basename(options['chip_file'])
74 input_name = os.path.basename(options['input_file']) 74 input_name = os.path.basename(options['input_file'])
75 created_narrow_peak = os.path.join( "/mnt/galaxyData/files/000", "%s_VS_%s.narrowPeak.gz" % (chip_name, input_name) ) 75 created_narrow_peak = os.path.join( tmp_dir, "%s_VS_%s.narrowPeak.gz" % (chip_name, input_name) )
76 if os.path.exists( created_narrow_peak ): 76 if os.path.exists( created_narrow_peak ):
77 shutil.move( created_narrow_peak, output_narrow_peak ) 77 shutil.move( created_narrow_peak, output_narrow_peak )
78 78
79 created_region_peak = os.path.join( "/mnt/galaxyData/files/000", "%s_VS_%s.regionPeak.gz" % (chip_name, input_name) ) 79 created_region_peak = os.path.join( tmp_dir, "%s_VS_%s.regionPeak.gz" % (chip_name, input_name) )
80 if os.path.exists( created_region_peak ): 80 if os.path.exists( created_region_peak ):
81 shutil.move( created_region_peak, output_region_peak ) 81 shutil.move( created_region_peak, output_region_peak )
82 82
83 created_peakshift_file = os.path.join( tmp_dir, "peakshift.txt" ) 83 created_peakshift_file = os.path.join( tmp_dir, "peakshift.txt" )
84 if os.path.exists( created_peakshift_file ): 84 if os.path.exists( created_peakshift_file ):