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comparison chipenrich.xml @ 2:ddefda892a8d draft

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author mora-lab
date Sun, 13 Jun 2021 06:33:39 +0000
parents 3eaa000a7bf1
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1:3eaa000a7bf1 2:ddefda892a8d
221 <option value="10kb"> &lt; 10kb (only use peaks within 10kb of a transcription start site)</option> 221 <option value="10kb"> &lt; 10kb (only use peaks within 10kb of a transcription start site)</option>
222 </param> 222 </param>
223 </when> 223 </when>
224 <when value="genedistal"> 224 <when value="genedistal">
225 <param name="locusdefs" type="select" label="Gene distal regulation choices" display="radio" help="" > 225 <param name="locusdefs" type="select" label="Gene distal regulation choices" display="radio" help="" >
226 <option value="1kb_outstie"> &gt; 1kb (only use peaks greater than 1kb of a transcription start site)</option> 226 <option value="1kb_outside"> &gt; 1kb (only use peaks greater than 1kb of a transcription start site)</option>
227 <option value="5kb_outstie"> &gt; 5kb (only use peaks greater than 5kb of a transcription start site)</option> 227 <option value="5kb_outside"> &gt; 5kb (only use peaks greater than 5kb of a transcription start site)</option>
228 <option value="10kb_outstie"> &gt; 10kb (only use peaks greater than 10kb of a transcription start site)</option> 228 <option value="10kb_outside"> &gt; 10kb (only use peaks greater than 10kb of a transcription start site)</option>
229 <option value="1kb_outstie_upstream"> &gt; 1kb upstream (only use peaks greater than 1kb upstream of a transcription start site)</option> 229 <option value="1kb_outside_upstream"> &gt; 1kb upstream (only use peaks greater than 1kb upstream of a transcription start site)</option>
230 <option value="5kb_outstie_upstream"> &gt; 5kb upstream (only use peaks greater than 5kb upstream of a transcription start site)</option> 230 <option value="5kb_outside_upstream"> &gt; 5kb upstream (only use peaks greater than 5kb upstream of a transcription start site)</option>
231 <option value="10kb_outstie_upstream"> &gt; 10kb upstream (only use peaks greater than 10kb upstream of a transcription start site)</option> 231 <option value="10kb_outside_upstream"> &gt; 10kb upstream (only use peaks greater than 10kb upstream of a transcription start site)</option>
232 </param> 232 </param>
233 </when> 233 </when>
234 <when value="regulation"> 234 <when value="regulation">
235 <param name="locusdefs" type="select" label="Regulation from across the whole genome" display="radio" help="" > 235 <param name="locusdefs" type="select" label="Regulation from across the whole genome" display="radio" help="" >
236 <option value="nearest_gene">Nearest Gene (use all peaks; assign peaks to the nearest gene defined by transcription start and end sites)</option> 236 <option value="nearest_gene">Nearest Gene (use all peaks; assign peaks to the nearest gene defined by transcription start and end sites)</option>