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8
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1 <macros>
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2
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3 <token name="@VERSION@">0.0.41</token>
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4 <xml name="requirements">
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5 <requirements>
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6 <requirement type="package" version="0.0.41">epic2</requirement>
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7 <requirement type="package">htslib</requirement>
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8 </requirements>
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9 </xml>
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10
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11 <xml name="citations">
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12 <citations>
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13 <citation type="doi">10.1093/bioinformatics/btz232</citation>
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14 <yield />
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15 </citations>
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16 </xml>
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17
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18 <xml name="effectiveGenomeSize">
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19 <param name="builtin_genome" argument="--genome" type="select" label="Genome" help="Default hg19 (--genome)" >
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20 <option value="ailMel1">ailMel1</option>
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21 <option value="anoCar2">anoCar2</option>
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22 <option value="apiMel1">apiMel1</option>
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23 <option value="aplCal1">aplCal1</option>
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24 <option value="aquChr2">aquChr2</option>
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25 <option value="balAcu1">balAcu1</option>
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26 <option value="braFlo1">braFlo1</option>
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27 <option value="calJac1">calJac1</option>
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28 <option value="calJac3">calJac3</option>
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29 <option value="cavPor3">cavPor3</option>
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30 <option value="ce10">ce10</option>
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31 <option value="ce11">ce11</option>
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32 <option value="cerSim1">cerSim1</option>
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33 <option value="chlSab2">chlSab2</option>
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34 <option value="chrPic1">chrPic1</option>
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35 <option value="danRer10">danRer10</option>
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36 <option value="danRer3">danRer3</option>
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37 <option value="danRer4">danRer4</option>
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38 <option value="danRer5">danRer5</option>
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39 <option value="danRer6">danRer6</option>
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40 <option value="danRer7">danRer7</option>
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41 <option value="dm3">dm3</option>
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42 <option value="dm6">dm6</option>
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43 <option value="echTel2">echTel2</option>
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44 <option value="equCab1">equCab1</option>
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45 <option value="equCab2">equCab2</option>
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46 <option value="eriEur1">eriEur1</option>
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47 <option value="eriEur2">eriEur2</option>
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48 <option value="fr1">fr1</option>
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49 <option value="fr2">fr2</option>
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50 <option value="galVar1">galVar1</option>
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51 <option value="gasAcu1">gasAcu1</option>
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52 <option value="geoFor1">geoFor1</option>
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53 <option value="gorGor3">gorGor3</option>
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54 <option value="gorGor4">gorGor4</option>
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55 <option value="gorGor5">gorGor5</option>
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56 <option value="hetGla1">hetGla1</option>
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57 <option value="hetGla2">hetGla2</option>
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58 <option value="hg18">hg18</option>
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59 <option value="hg19" selected="true">hg19</option>
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60 <option value="hg38">hg38</option>
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61 <option value="loxAfr3">loxAfr3</option>
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62 <option value="macEug2">macEug2</option>
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63 <option value="melGal1">melGal1</option>
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64 <option value="melGal5">melGal5</option>
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65 <option value="micMur2">micMur2</option>
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66 <option value="mm10">mm10</option>
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67 <option value="mm9">mm9</option>
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68 <option value="monDom4">monDom4</option>
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69 <option value="monDom5">monDom5</option>
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70 <option value="myoLuc2">myoLuc2</option>
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71 <option value="nanPar1">nanPar1</option>
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72 <option value="nasLar1">nasLar1</option>
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73 <option value="nomLeu1">nomLeu1</option>
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74 <option value="nomLeu2">nomLeu2</option>
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75 <option value="nomLeu3">nomLeu3</option>
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76 <option value="ochPri3">ochPri3</option>
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77 <option value="oreNil2">oreNil2</option>
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78 <option value="ornAna1">ornAna1</option>
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79 <option value="ornAna2">ornAna2</option>
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80 <option value="oryCun2">oryCun2</option>
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81 <option value="oryLat2">oryLat2</option>
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82 <option value="oviAri1">oviAri1</option>
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83 <option value="oviAri3">oviAri3</option>
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84 <option value="papAnu2">papAnu2</option>
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85 <option value="petMar1">petMar1</option>
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86 <option value="petMar2">petMar2</option>
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87 <option value="ponAbe2">ponAbe2</option>
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88 <option value="priPac1">priPac1</option>
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89 <option value="rheMac2">rheMac2</option>
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90 <option value="rheMac3">rheMac3</option>
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91 <option value="rheMac8">rheMac8</option>
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92 <option value="rhiRox1">rhiRox1</option>
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93 <option value="rn4">rn4</option>
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94 <option value="rn5">rn5</option>
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95 <option value="rn6">rn6</option>
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96 <option value="sacCer1">sacCer1</option>
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97 <option value="sacCer2">sacCer2</option>
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98 <option value="sacCer3">sacCer3</option>
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99 <option value="saiBol1">saiBol1</option>
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100 <option value="sorAra2">sorAra2</option>
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101 <option value="speTri2">speTri2</option>
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102 <option value="strPur1">strPur1</option>
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103 <option value="strPur2">strPur2</option>
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104 <option value="susScr2">susScr2</option>
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105 <option value="susScr3">susScr3</option>
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106 <option value="taeGut1">taeGut1</option>
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107 <option value="taeGut2">taeGut2</option>
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108 <option value="tarSyr2">tarSyr2</option>
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109 <option value="tetNig1">tetNig1</option>
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110 <option value="tetNig2">tetNig2</option>
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111 <option value="triMan1">triMan1</option>
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112 <option value="xenTro3">xenTro3</option>
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113 <option value="xenTro7">xenTro7</option>
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114 </param>
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115 </xml>
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116
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117 </macros>
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