# HG changeset patch # User mrvollger # Date 1418329193 18000 # Node ID 2b1093ae4d0c05bdf5f89339fa36ef4649e8a184 # Parent b3b40009d056df166eb46d87e1e04648262a2722 Deleted selected files diff -r b3b40009d056 -r 2b1093ae4d0c TRTR --- a/TRTR Thu Dec 11 15:16:18 2014 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,658 +0,0 @@ - - - - - - - - - - - - - mvollger/TRTR · GitHub - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Skip to content -
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- - latest commit 18ed489cf4 - -
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- - - - test-data - - - This is version 1.00 of TRTR - - - -
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- - README.md -

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This tool removes tandem repeats from ends of unaligned sequencing reads (leaving one copy). This prevents reads that don't span the repeated region from overlapping and leading to innaccurate SNPs calls.

- -

The maximimum repeat length is adjustable (use 1 to trim only homopolymers).

- -

The "aggressive" option should not be touched in general. Setting to 0 will prevent the program from trimming to exactly 1 copy of the repeat, instead leaving between 1 and 2 copies.

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This could also be a useful first step before assembly. More testing needs to be done.

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- - - - - - - - - diff -r b3b40009d056 -r 2b1093ae4d0c TRTR.git --- a/TRTR.git Thu Dec 11 15:16:18 2014 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,658 +0,0 @@ - - - - - - - - - - - - - mvollger/TRTR · GitHub - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Skip to content -
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- - /TRTR - - - - - -

-
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-
- - - -
- - -
-

HTTPS clone URL

-
- - - - -
-
- - -
-

Subversion checkout URL

-
- - - - -
-
- - - -

You can clone with - HTTPS or Subversion. - - - -

- - - - - - Download ZIP - -
-
- -
- - - -
- - - -
- -
- -
-
- - -
-
    -
  1. - - - C - 100% - -
    2. -
-
-
-
- -
- -
- - C - -
- - - -
- - - - - - - - -
- - - branch: - master - - - -
- - - -
TRTR/
-
- - - - -
-

- adding read me file - -

-
- - latest commit 18ed489cf4 - -
- Mitchell Robert Vollger - - authored - -
-
-
- - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Failed to load latest commit information.
- - - - test-data - - - This is version 1.00 of TRTR - - - -
- - - - README.md - - - adding read me file - - - -
- - - - trtr - - - This is version 1.00 of TRTR - - - -
- - - - trtr.c - - - This is version 1.00 of TRTR - - - -
- - - - trtr.xml - - - This is version 1.00 of TRTR - - - -
- -
- - -
-

- - README.md -

- -

This tool removes tandem repeats from ends of unaligned sequencing reads (leaving one copy). This prevents reads that don't span the repeated region from overlapping and leading to innaccurate SNPs calls.

- -

The maximimum repeat length is adjustable (use 1 to trim only homopolymers).

- -

The "aggressive" option should not be touched in general. Setting to 0 will prevent the program from trimming to exactly 1 copy of the repeat, instead leaving between 1 and 2 copies.

- -

This could also be a useful first step before assembly. More testing needs to be done.

-
-
- - -
- -
-
-
-
- - -
- -
- -
- - -
-
-
- -
-
-
-
-
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- - - - - - -
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- - - -
- - - Something went wrong with that request. Please try again. -
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