# HG changeset patch # User mrvollger # Date 1418328978 18000 # Node ID b3b40009d056df166eb46d87e1e04648262a2722 # Parent d734400388b1e1fb0f3cf7f13a653b9cdeb74541 Uploaded diff -r d734400388b1 -r b3b40009d056 TRTR.git --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TRTR.git Thu Dec 11 15:16:18 2014 -0500 @@ -0,0 +1,658 @@ + + + + + + + + + + + + + mvollger/TRTR ยท GitHub + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Skip to content +
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+ + + + test-data + + + This is version 1.00 of TRTR + + + +
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+ + + + trtr + + + This is version 1.00 of TRTR + + + +
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This tool removes tandem repeats from ends of unaligned sequencing reads (leaving one copy). This prevents reads that don't span the repeated region from overlapping and leading to innaccurate SNPs calls.

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The maximimum repeat length is adjustable (use 1 to trim only homopolymers).

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The "aggressive" option should not be touched in general. Setting to 0 will prevent the program from trimming to exactly 1 copy of the repeat, instead leaving between 1 and 2 copies.

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This could also be a useful first step before assembly. More testing needs to be done.

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