# HG changeset patch # User mrvollger # Date 1418328056 18000 # Node ID f4fa07be710a23c9050d8b47b0e3913bd34681d9 Version 1.0 upload. diff -r 000000000000 -r f4fa07be710a TRTR --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TRTR Thu Dec 11 15:00:56 2014 -0500 @@ -0,0 +1,658 @@ + + + + + + + + + + + + + mvollger/TRTR ยท GitHub + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Skip to content +
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+ + + + test-data + + + This is version 1.00 of TRTR + + + +
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This tool removes tandem repeats from ends of unaligned sequencing reads (leaving one copy). This prevents reads that don't span the repeated region from overlapping and leading to innaccurate SNPs calls.

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The maximimum repeat length is adjustable (use 1 to trim only homopolymers).

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The "aggressive" option should not be touched in general. Setting to 0 will prevent the program from trimming to exactly 1 copy of the repeat, instead leaving between 1 and 2 copies.

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This could also be a useful first step before assembly. More testing needs to be done.

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