Mercurial > repos > muon-spectroscopy-computational-project > larch_athena
changeset 5:27015eaf9a78 draft default tip
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 47b59eb1f13fe9f4893acbf9e3e77341d303de73
| author | muon-spectroscopy-computational-project |
|---|---|
| date | Mon, 20 May 2024 15:34:58 +0000 |
| parents | a0d3b0fe0fa3 |
| children | |
| files | larch_athena.py larch_athena.xml test-data/nested.zip |
| diffstat | 3 files changed, 10 insertions(+), 2 deletions(-) [+] |
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--- a/larch_athena.py Thu Apr 11 09:01:59 2024 +0000 +++ b/larch_athena.py Mon May 20 15:34:58 2024 +0000 @@ -162,7 +162,7 @@ for filename in filenames: if len(all_paths) > 1: - key = f"{dirpath}_{filename}" + key = f"{dirpath.replace('/', '_')}_{filename}" else: key = filename filepath = os.path.join(dirpath, filename)
--- a/larch_athena.xml Thu Apr 11 09:01:59 2024 +0000 +++ b/larch_athena.xml Mon May 20 15:34:58 2024 +0000 @@ -4,7 +4,7 @@ <!-- version of underlying tool (PEP 440) --> <token name="@TOOL_VERSION@">0.9.75</token> <!-- version of this tool wrapper (integer) --> - <token name="@WRAPPER_VERSION@">0</token> + <token name="@WRAPPER_VERSION@">1</token> <!-- citation should be updated with every underlying tool version --> <!-- typical fields to update are version, month, year, and doi --> <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token> @@ -449,6 +449,14 @@ </assert_contents> </output> </test> + <!-- 19: Zip file with nested directories --> + <test expect_num_outputs="2"> + <param name="is_zipped" value="true"/> + <param name="dat_file" value="nested.zip"/> + <param name="plot_graph" value="edge,flat,dmude"/> + <output_collection name="athena_project_file_collection" type="list" count="2"/> + <output_collection name="plot_collection" type="list" count="2"/> + </test> </tests> <help><![CDATA[ Using Larch, create an Athena project file from the input X-ray Absorption Fine Structure (XAFS) data file.