Mercurial > repos > mvdbeek > add_input_name_as_column

comparison add_input_name_as_column.xml @ 6:3284b72eef56 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/add_input_name_as_column commit 9292c57c34283543e86ecc65f805977224f6fc7b"
author iuc
date Wed, 25 Mar 2020 07:11:05 -0400
parents 06061aa49527
children
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5:06061aa49527 6:3284b72eef56
1 <tool id="addName" name="Add input name as column" version="0.1.2" profile="17.09"> 1 <tool id="addName" name="Add input name as column" version="0.2.0" profile="17.09">
2 <description>to an existing tabular file</description> 2 <description>to an existing tabular file</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.7">python</requirement> 4 <requirement type="package" version="3.7">python</requirement>
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 python '$__tool_directory__/'add_input_name_as_column.py 7 python '$__tool_directory__/'add_input_name_as_column.py
8 --input '$input' 8 --input '$input'
9 --label '$input.element_identifier' 9 --label '$input.element_identifier'
10 --output '$output' 10 --output '$output'
11 #if $header.contains_header=="yes": 11 #if $header.contains_header=="yes":
12 --header "$header.colname" 12 --header "$header.colname"
13 #end if 13 #end if
14 ]]></command> 14 $prepend
15 <inputs> 15 ]]></command>
16 <param format="txt" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" /> 16 <inputs>
17 <conditional name="header"> 17 <param format="txt" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
18 <param name="contains_header" type="select" label="input contains a header line?" > 18 <conditional name="header">
19 <option value="yes" selected="true">Yes</option> 19 <param name="contains_header" type="select" label="input contains a header line?" >
20 <option value="no">No</option> 20 <option value="yes" selected="true">Yes</option>
21 </param> 21 <option value="no">No</option>
22 <when value="yes"> 22 </param>
23 <param name="colname" type="text" value="sample" help="select a column header to be added in the first line"> 23 <when value="yes">
24 <validator type="empty_field" message="please add a column header"/> 24 <param name="colname" type="text" value="sample" help="select a column header to be added in the first line">
25 </param> 25 <validator type="empty_field" message="please add a column header"/>
26 </when> 26 </param>
27 <when value="no"> 27 </when>
28 </when> 28 <when value="no"/>
29 </conditional> 29 </conditional>
30 </inputs> 30 <param name="prepend" type="boolean" truevalue="--prepend" falsevalue="" checked="false" label="Prepend the colum" />
31 <outputs> 31 </inputs>
32 <data name="output" format="tabular" /> 32 <outputs>
33 </outputs> 33 <data name="output" format="tabular" />
34 <tests> 34 </outputs>
35 <test> 35 <tests>
36 <param name="input" value="signature.tab" ftype="tabular" /> 36 <test>
37 <param name="contains_header" value="yes" /> 37 <param name="input" value="signature.tab" ftype="tabular" />
38 <param name="colname" value="sample" /> 38 <param name="contains_header" value="yes" />
39 <output name="output" file="signature_with_header.tab" ftype="tabular"/> 39 <param name="colname" value="sample" />
40 </test> 40 <output name="output" file="signature_with_header.tab" ftype="tabular"/>
41 <test> 41 </test>
42 <param name="input" value="signature.tab" ftype="tabular" /> 42 <test>
43 <param name="contains_header" value="no" /> 43 <param name="input" value="signature.tab" ftype="tabular" />
44 <output name="output" file="signature_without_header.tab" ftype="tabular"/> 44 <param name="contains_header" value="no" />
45 </test> 45 <param name="prepend" value="true" />
46 </tests> 46 <output name="output" file="signature_without_header.tab" ftype="tabular"/>
47 <help> 47 </test>
48 </tests>
49 <help><![CDATA[
50 **What it does**
51
52 Adds a new column with the name of the input file as it appears in the history.
53 By default the column is appended.
54
55 -----
48 56
49 .. class:: infomark 57 .. class:: infomark
50 58
51 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert* 59 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
52 60
53 ----- 61 ]]></help>
54
55 **What it does**
56
57 Adds a new column with the name of the input file as it appears in the history.
58 Written by Marius van den Beek, m.vandenbeek at gmail dot com
59 </help>
60 </tool> 62 </tool>
61