diff add_input_name_as_column.xml @ 5:06061aa49527 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/add_input_name_as_column commit db90fc6943b99322a6d7459f644a6624c69a0be5-dirty

--- a/add_input_name_as_column.xml	Fri Mar 20 14:51:56 2015 +0100
+++ b/add_input_name_as_column.xml	Wed Mar 06 09:16:29 2019 -0500
@@ -1,26 +1,30 @@
-<tool id="addName" name="Add input name as column" version="0.1.1">
+<tool id="addName" name="Add input name as column" version="0.1.2" profile="17.09">
   <description>to an existing tabular file</description>
-  <command interpreter="python">add_input_name_as_column.py 
-    --input "$input" 
-    --label "$input.element_identifier" 
-    --output "$output"
-    #if $header.contains_header=="yes":
-      --header "$header.colname"
-    #end if
-  </command>
+  <requirements>
+    <requirement type="package" version="3.7">python</requirement>
+  </requirements>
+  <command><![CDATA[
+python '$__tool_directory__/'add_input_name_as_column.py
+--input '$input'
+--label '$input.element_identifier'
+--output '$output'
+#if $header.contains_header=="yes":
+  --header "$header.colname"
+#end if
+  ]]></command>
   <inputs>
-  <param format="tabular" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
+  <param format="txt" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
   <conditional name="header">
     <param name="contains_header" type="select" label="input contains a header line?" >
       <option value="yes" selected="true">Yes</option>
       <option value="no">No</option>
     </param>
-    <when value="yes"> 
+    <when value="yes">
       <param name="colname" type="text" value="sample" help="select a column header to be added in the first line">
         <validator type="empty_field" message="please add a column header"/>
       </param>
     </when>
-    <when value="no"> 
+    <when value="no">
     </when>
   </conditional>
   </inputs>
@@ -51,7 +55,7 @@
 **What it does**
 
 Adds a new column with the name of the input file as it appears in the history.
-Written by Marius van den Beek, m.vandenbeek at gmail . com
+Written by Marius van den Beek, m.vandenbeek at gmail dot com
   </help>
 </tool>