Mercurial > repos > mvdbeek > bam_readtagger
annotate test-data/three_cluster_out.gff @ 76:8c3d8d38674a draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit fee3f43c26cd13ffdb81d64a3c7809c570ba2194"
author | mvdbeek |
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date | Mon, 23 Mar 2020 12:42:34 -0400 |
parents | 97411db5f752 |
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rev | line source |
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4
7625c594bc37
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 14a5033994a789097d1c61d1f3318397813d3d29-dirty
mvdbeek
parents:
diff
changeset
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1 ##gff-version 3 |
69
97411db5f752
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents:
63
diff
changeset
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2 3R findcluster TE 13373206 13373206 2 + . ID=extended_and_annotated_roi.bam_0;genotype=homozygous;genotype_likelihoods=0.010684606252473288,0.32977179791584227,0.6595435958316845;insert_reference_name=None;left_inserts=;left_mate_count=2;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=;right_mate_count=0;softclip_clusters=;total_left_count=2;total_right_count=0;valid_TSD=False |
63
e675e6d349bd
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
mvdbeek
parents:
40
diff
changeset
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3 3R find_softclip 3p_clip 13373515 13373514 7 + . ID=SOFTCLIP_extended_and_annotated_roi.bam_3398f19a848a55cfd7c2bd0a378f055a;consensus=ACATATAGTAACATAATATGCTTCTCATATTACGTTTACATACTTACACTAATTGTAC;max_mapq=60 |
69
97411db5f752
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents:
63
diff
changeset
|
4 3R findcluster TE 13373515 13373524 20 + . ID=extended_and_annotated_roi.bam_1;genotype=homozygous;genotype_likelihoods=6.2761999508986e-30,1.9073449948406318e-06,0.9999980926550052;insert_reference_name=None;left_inserts=GGAAAAATAACGGTATGGATGCACAACAAATCATGCGCTTAAGTGTAAGTAAAAATGTAAGCTGGTTTGATGTGTTTATGCATGTGCAAGATTGTATGTACAATTAGTGTAAGTATGTAAACGTAATATGAGAAGCATATTATGTTACTATATGTATATGTCCATATGTCCATATGCATACGAATTGGCGCACTTGCTTATATTTGATATGAGTTTGTTAGTTAGATACATTCCGAG;left_mate_count=6;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=GACAACGAAGAAATAAAGATCCAAACTAAAAAAATACCTCGTGTTGATTCTGAAACTTCTTTAAAGGCGTTGATCTTAGTCAAACGACGGATCATTTGTTCGACTCGAATAGTAAAATACGTAAGTATATAGATAGTCTATATTAATTTTAAAAGCTCAAAGGGGCGCAAGTCTCTCTCATCAGTTGTGTCTTTAGTTTTTTTGATTTGGTTTGGTG;right_mate_count=6;softclip_clusters=SOFTCLIP_extended_and_annotated_roi.bam_3398f19a848a55cfd7c2bd0a378f055a,SOFTCLIP_extended_and_annotated_roi.bam_32b958679d37cf982d968bf395ce0801;total_left_count=9;total_right_count=11;valid_TSD=False |
63
e675e6d349bd
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
mvdbeek
parents:
40
diff
changeset
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5 3R find_softclip 5p_clip 13373525 13373524 6 + . ID=SOFTCLIP_extended_and_annotated_roi.bam_32b958679d37cf982d968bf395ce0801;consensus=CTTAGTCAAACGACGGATCATTTGTTCGACTCGAATAGTAAAATACGTAAGT;max_mapq=60 |
69
97411db5f752
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents:
63
diff
changeset
|
6 3R findcluster TE 13374539 13374676 1 + . ID=extended_and_annotated_roi.bam_2;genotype=homozygous;genotype_likelihoods=0.21259842519685054,0.3937007874015747;insert_reference_name=None;left_inserts=;left_mate_count=0;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=;right_mate_count=1;softclip_clusters=;total_left_count=0;total_right_count=1;valid_TSD=False |
97411db5f752
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents:
63
diff
changeset
|
7 3R findcluster TE 13374595 13374709 2 + . ID=extended_and_annotated_roi.bam_3;genotype=homozygous;genotype_likelihoods=0.010684606252473288,0.32977179791584227,0.6595435958316845;insert_reference_name=None;left_inserts=GTTCACCCGCGTCCGAGTTCCTGCTCCACTACTCCCTGGCTGCTGACTCACTGTTGTTATAGGGGTGGCTTCCCCTCTGTTCTTCCTGGGGGAATGCTGCATCTTCCCCAGCTCCAAAATGGCGG;left_mate_count=2;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=;right_mate_count=0;softclip_clusters=;total_left_count=2;total_right_count=0;valid_TSD=False |
63
e675e6d349bd
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
mvdbeek
parents:
40
diff
changeset
|
8 3R find_softclip 5p_clip 13374677 13374676 1 + . ID=SOFTCLIP_extended_and_annotated_roi.bam_ad5ab08ae7f225f452b4e79bb9ab8425;consensus=TGGCAAAACATATGCAAAGTGCA;max_mapq=60 |