Mercurial > repos > mvdbeek > bam_readtagger

annotate test-data/three_cluster_out.gff @ 81:a446ab055307 draft default tip

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 1abb25638cbf5e86c70b59de6453c7c045c2364f"
author mvdbeek
date Sun, 26 Apr 2020 07:59:19 -0400
parents 97411db5f752
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7625c594bc37 planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 14a5033994a789097d1c61d1f3318397813d3d29-dirty
mvdbeek
parents:
diff changeset
1 ##gff-version 3
69
97411db5f752 "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents: 63
diff changeset
2 3R findcluster TE 13373206 13373206 2 + . ID=extended_and_annotated_roi.bam_0;genotype=homozygous;genotype_likelihoods=0.010684606252473288,0.32977179791584227,0.6595435958316845;insert_reference_name=None;left_inserts=;left_mate_count=2;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=;right_mate_count=0;softclip_clusters=;total_left_count=2;total_right_count=0;valid_TSD=False
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e675e6d349bd "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
mvdbeek
parents: 40
diff changeset
3 3R find_softclip 3p_clip 13373515 13373514 7 + . ID=SOFTCLIP_extended_and_annotated_roi.bam_3398f19a848a55cfd7c2bd0a378f055a;consensus=ACATATAGTAACATAATATGCTTCTCATATTACGTTTACATACTTACACTAATTGTAC;max_mapq=60
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97411db5f752 "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents: 63
diff changeset
4 3R findcluster TE 13373515 13373524 20 + . ID=extended_and_annotated_roi.bam_1;genotype=homozygous;genotype_likelihoods=6.2761999508986e-30,1.9073449948406318e-06,0.9999980926550052;insert_reference_name=None;left_inserts=GGAAAAATAACGGTATGGATGCACAACAAATCATGCGCTTAAGTGTAAGTAAAAATGTAAGCTGGTTTGATGTGTTTATGCATGTGCAAGATTGTATGTACAATTAGTGTAAGTATGTAAACGTAATATGAGAAGCATATTATGTTACTATATGTATATGTCCATATGTCCATATGCATACGAATTGGCGCACTTGCTTATATTTGATATGAGTTTGTTAGTTAGATACATTCCGAG;left_mate_count=6;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=GACAACGAAGAAATAAAGATCCAAACTAAAAAAATACCTCGTGTTGATTCTGAAACTTCTTTAAAGGCGTTGATCTTAGTCAAACGACGGATCATTTGTTCGACTCGAATAGTAAAATACGTAAGTATATAGATAGTCTATATTAATTTTAAAAGCTCAAAGGGGCGCAAGTCTCTCTCATCAGTTGTGTCTTTAGTTTTTTTGATTTGGTTTGGTG;right_mate_count=6;softclip_clusters=SOFTCLIP_extended_and_annotated_roi.bam_3398f19a848a55cfd7c2bd0a378f055a,SOFTCLIP_extended_and_annotated_roi.bam_32b958679d37cf982d968bf395ce0801;total_left_count=9;total_right_count=11;valid_TSD=False
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e675e6d349bd "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
mvdbeek
parents: 40
diff changeset
5 3R find_softclip 5p_clip 13373525 13373524 6 + . ID=SOFTCLIP_extended_and_annotated_roi.bam_32b958679d37cf982d968bf395ce0801;consensus=CTTAGTCAAACGACGGATCATTTGTTCGACTCGAATAGTAAAATACGTAAGT;max_mapq=60
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97411db5f752 "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents: 63
diff changeset
6 3R findcluster TE 13374539 13374676 1 + . ID=extended_and_annotated_roi.bam_2;genotype=homozygous;genotype_likelihoods=0.21259842519685054,0.3937007874015747;insert_reference_name=None;left_inserts=;left_mate_count=0;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=;right_mate_count=1;softclip_clusters=;total_left_count=0;total_right_count=1;valid_TSD=False
97411db5f752 "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 5071cc844a6999040ea605deb2eb88aafb7fb16b"
mvdbeek
parents: 63
diff changeset
7 3R findcluster TE 13374595 13374709 2 + . ID=extended_and_annotated_roi.bam_3;genotype=homozygous;genotype_likelihoods=0.010684606252473288,0.32977179791584227,0.6595435958316845;insert_reference_name=None;left_inserts=GTTCACCCGCGTCCGAGTTCCTGCTCCACTACTCCCTGGCTGCTGACTCACTGTTGTTATAGGGGTGGCTTCCCCTCTGTTCTTCCTGGGGGAATGCTGCATCTTCCCCAGCTCCAAAATGGCGG;left_mate_count=2;max_mapq=60;nref=0;proper_pair_only=False;right_inserts=;right_mate_count=0;softclip_clusters=;total_left_count=2;total_right_count=0;valid_TSD=False
63
e675e6d349bd "planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
mvdbeek
parents: 40
diff changeset
8 3R find_softclip 5p_clip 13374677 13374676 1 + . ID=SOFTCLIP_extended_and_annotated_roi.bam_ad5ab08ae7f225f452b4e79bb9ab8425;consensus=TGGCAAAACATATGCAAAGTGCA;max_mapq=60