Mercurial > repos > mvdbeek > bam_readtagger
comparison bam_readtagger.xml @ 35:02afdbc69591 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit e4cd04d8a19b57d6b23da64c3fda8978b51e33ef
| author | mvdbeek |
|---|---|
| date | Thu, 14 Dec 2017 03:52:04 -0500 |
| parents | 240c901dedc0 |
| children | d0b3329a8e4b |
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| 34:240c901dedc0 | 35:02afdbc69591 |
|---|---|
| 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.4.1"> | 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.4.4"> |
| 2 <description>from multiple bam files</description> | 2 <description>from multiple bam files</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="0.4.1">readtagger</requirement> | 7 <requirement type="package" version="0.4.4">readtagger</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 readtagger -t '$tag_file' -s | 10 readtagger -t '$tag_file' -s |
| 11 #for $element in $alignment_series | 11 #for $element in $alignment_series |
| 12 '$element.annotate_with':$element.r_tag:$element.m_tag | 12 '$element.annotate_with':$element.r_tag:$element.m_tag |