Mercurial > repos > mvdbeek > bam_readtagger
comparison findcluster.xml @ 59:13c5f2e30a13 draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 50b330e8472fe70f5bdb13f8d2628bb864005924"
author | mvdbeek |
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date | Wed, 28 Aug 2019 13:13:40 -0400 |
parents | 84f51c5d69e3 |
children | 01acf62d5012 |
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58:84f51c5d69e3 | 59:13c5f2e30a13 |
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1 <tool id="findcluster" name="Find clusters of reads" version="0.5.5"> | 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.6"> |
2 <description>in bam files</description> | 2 <description>in bam files</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <requirements> | 6 <requirements> |
7 <requirement type="package" version="0.5.5">readtagger</requirement> | 7 <requirement type="package" version="0.5.6">readtagger</requirement> |
8 </requirements> | 8 </requirements> |
9 <version_command>findcluster --version</version_command> | 9 <version_command>findcluster --version</version_command> |
10 <command detect_errors="aggressive"><![CDATA[ | 10 <command detect_errors="aggressive"><![CDATA[ |
11 #import re | 11 #import re |
12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) | 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) |