Mercurial > repos > mvdbeek > bam_readtagger
comparison extract_variants.xml @ 62:16eba798cbc6 draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 20d187a08a5c511cb38e7e60aeadfc2962dc03d3"
author | mvdbeek |
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date | Sat, 31 Aug 2019 09:48:36 -0400 |
parents | 210427d5c65a |
children | e675e6d349bd |
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61:210427d5c65a | 62:16eba798cbc6 |
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1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.8"> | 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.9"> |
2 <description>from long reads</description> | 2 <description>from long reads</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.5.8">readtagger</requirement> | 4 <requirement type="package" version="0.5.9">readtagger</requirement> |
5 </requirements> | 5 </requirements> |
6 <version_command>extract_variants --version</version_command> | 6 <version_command>extract_variants --version</version_command> |
7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
8 ln -fs '$insert_reference.fields.path' reference.fa && | 8 ln -fs '$insert_reference.fields.path' reference.fa && |
9 extract_variants '$input' '$output' reference.fa | 9 extract_variants '$input' '$output' reference.fa |