Mercurial > repos > mvdbeek > bam_readtagger
comparison findcluster.xml @ 64:190d64e5e32b draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit be63fdf98ea1aaa5009136c6b0f8c1311e53bb8e"
| author | mvdbeek |
|---|---|
| date | Sun, 01 Sep 2019 16:30:54 -0400 |
| parents | e675e6d349bd |
| children | da97e0316abc |
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| 63:e675e6d349bd | 64:190d64e5e32b |
|---|---|
| 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.10"> | 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.11"> |
| 2 <description>in bam files</description> | 2 <description>in bam files</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="0.5.10">readtagger</requirement> | 7 <requirement type="package" version="0.5.11">readtagger</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <version_command>findcluster --version</version_command> | 9 <version_command>findcluster --version</version_command> |
| 10 <command detect_errors="aggressive"><![CDATA[ | 10 <command detect_errors="aggressive"><![CDATA[ |
| 11 #import re | 11 #import re |
| 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) | 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) |